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URL: http://pogs.uoregon.edu/#/
Proper Citation: POGs/PlantRBP (RRID:SCR_007865)
Description: A relational database that integrates data from rice, maize, and Arabidopsis by placing the complete Arabidopsis and rice proteomes, and the available maize sequences into "putative orthologous groups" (POGS). Annotation efforts are now beginning and will focus on predicted RNA binding proteins (e.g. those with known RNA binding domains or known to influence RNA function). Putative Orthologous Groups (POGs) form the heart of the database, and were assigned using a mutual best hit strategy after performing BLAST comparisons of the predicted Arabidopsis and rice proteomes. Each POG entry includes cross-referenced orthologs and paralogs in Arabidopsis and rice, annotated with domain organization, gene models, phylogenetic trees showing closely-related proteins, and intracellular targeting predictions. The database can be queried to identify POGs with specific domain combinations and predicted intracellular locations.
Synonyms: POGs/PlantRBP
Resource Type: data or information resource, database
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