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URL: https://github.com/earth-metabolome-initiative/metrin-kg
Proper Citation: MEtabolomes, TRaits, and INteractions-Knowledge Graph (RRID:SCR_027914)
Description: Software pipeline for generating knowledge graph integrating emi, trydb, globi datasets. Code for constructing a knowledge graph that integrates enriched metabolite data from Experimental Natural Products Knowledge Graph (ENPKG), LOTUS (available through Wikidata), plant trait data from TRY, and biotic interaction data from Global Biotic Interactions (GloBI). It performs taxonomic alignment against Wikidata records and generates Resource Description Framework (RDF) triples representing taxonomic relationships, traits, and species interactions. The resulting knowledge graph is queryable via a SPARQL (SPARQL Protocol and RDF Query Language) endpoint.
Abbreviations: METRIN-KG
Resource Type: software toolkit, software resource, source code
Defining Citation: DOI:10.1101/2025.08.20.671289
Keywords: Knowledge Graphs, Plant Metabolomes, Plant Traits, Biotic Interactions
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