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URL: https://github.com/blobtoolkit/blobtoolkit
Proper Citation: Blobtoolkit (RRID:SCR_025882)
Description: Software suite based on BlobTools to aid researchers in identifying and isolating non-target data in draft and publicly available genome assemblies. Used for genome assembly QC and contaminant cobiont detection and filtering. Can be used to process assembly, read and analysis files for fully reproducible interactive exploration in the browser-based Viewer. Can be used during assembly to filter non-target DNA. BlobToolKit is comprised of four distinct components: BlobTools2 (command line tools to create and filter datasets), Specification (a formal specification and validator for the JSON-based data format), Viewer (interactive dataset visualization), and INSDC-pipeline (a Snakemake pipeline to run the BlobToolKit workflow on publicly available datasets).
Synonyms: BlobToolKit
Resource Type: software toolkit, software resource, source code
Defining Citation: PMID:32071071
Keywords: genome assemblies, identifying and isolating non-target data, non-target DNA, genome assembly QC,
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