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URL: http://athina.biol.uoa.gr/SecStr/
Proper Citation: SecStr (RRID:SCR_006220)
Description: A tool to Predict the Secondary Structure of a protein from its amino acid sequence alone. The SecStr package uses six different secondary structure prediction methods (Nagano, Garnier et al., Burges et al., Chou and Fasman , Lim and Dufton and Hider). The results of those methods are combined into a Joint Prediction Histogram (JPH) as described by Hamodrakas, 1988 and Hamodrakas et al., 1982. As previously mentioned, the SecStr package contains computer programs making use of the secondary structure prediction methods of Nagano, Garnier et al., Burges et al., Chou and Fasman, Lim and Dufton and Hider. These programs were written in Fortran. The results of individual prediction methods are combined as described by Hamodrakas (1988), using a Perl program, to produce joint prediction histograms (JPH), for three types of secondary structure, which may be presented separately on a Java Applet. The output may be given either in text or graphics mode. For the latter a Java capable browser is required.
Abbreviations: SecStr
Synonyms: SecStr - Secondary Structure Prediction, Secondary Structure Prediction, Secondary Structure Prediction of Proteins
Resource Type: service resource, analysis service resource, production service resource, data analysis service
Keywords: secondary structure, prediction, protein, algorithm, text, graphics
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University of Athens Biophysics and Bioinformatics Laboratory |
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