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URL: https://github.com/cwhelan/cloudbreak
Proper Citation: Cloudbreak (RRID:SCR_005097)
Description: Software providing a Hadoop-based genomic structural variation (SV) caller for Illumina paired-end DNA sequencing data. It contains a full pipeline for aligning data in the form of FASTQ files using alignment pipelines that generate many possible mappings for every read, in the Hadoop framework. It then contains Hadoop jobs for computing genomic features from the alignments, and for calling insertion and deletion variants from those features.
Resource Type: software resource
Keywords: illumina, mapreduce, insertion, deletion, genomic
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Source: SciCrunch Registry
