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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Cognitive and Emotional Health Project: The Healthy Brain Resource Report Resource Website |
Cognitive and Emotional Health Project: The Healthy Brain (RRID:SCR_007390) | CEHP | data or information resource, portal, database, topical portal | Trans-NIH project to assess the state of longitudinal and epidemiological research on demographic, social and biologic determinants of cognitive and emotional health in aging adults and the pathways by which cognitive and emotional health may reciprocally influence each other. A database of large scale longitudinal study relevant to healthy aging in 4 domains was created based on responses of investigators conducting these studies and is available for query. The four domains are: * Cognitive Health * Emotional Health * Demographic and Social Factors * Biomedical and Physiologic Factors | healthy aging, cognitive health, demographics, longitudinal study, aging study, late adult human, cognition, emotion, adult human, longitudinal, epidemiology, psychosocial, questionnaire, social factor, physiologic factor | has parent organization: National Institutes of Health | Cognitive impairment, Emotional disorder, Aging | NIA ; NIMH ; NINDS |
nif-0000-00421 | SCR_007390 | Cognitive and Emotional Health Project (CEHP), Cognitive Emotional Health Project: The Healthy Brain, Cognitive Emotional Health Project, Cognitive and Emotional Health Project | 2026-02-14 02:01:31 | 0 | ||||||
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NIA Mutant Mouse Aging Colony Handbook Resource Report Resource Website |
NIA Mutant Mouse Aging Colony Handbook (RRID:SCR_007328) | NIA Mutant Mouse Aging Colony | biomaterial supply resource, organism supplier, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 09, 2013. Supply aged mutant and transgenic mice for NIH-supported research directly related to the biology of aging. The mice are raised by the NIA's contractor, Taconic Farms, in Specific Pathogen-Free (SPF) barrier facilities. The strains in the mutant mouse aging colony have been donated by the investigators who developed the models, and those investigators are still the legally recognized owners of the intellectual property. A Material Transfer Agreement (MTA) is required to purchase the mice (a one-time requirement per strain). There are restrictions to the use of this colony as described in the MTA. These restrictions include a prohibition against breeding the mice purchased from the NIA Mutant Mouse Aging Colony, agreement that the mice will not be used for commercial purposes, and agreement that the mice and all derivatives will not be transferred to third parties. The restrictions are further spelled out in the MTA. Animals are sold by age, not weight, and ages are stated in 1 month intervals only; all animals born within a calendar month are considered to be the same age, so date of birth (DOB) is given as month/year. All mice are virgins. The mutant mouse aging colony is slated to end in September 2013. Old mice will be available until September 2013 but the availability of young mice will end earlier. Entries of different strains into the mutant mouse aging colony will end at different times, dependent on the lifespan and pattern of use of the strain. Mouse models include: * Snell Dwarf (3623) ??????????????? last entry will be the November 2011 DOB (date of birth) * Ames Dwarf (324) ??????????????? last entry will be the October 2012 DOB * A53T ???????????????????????-synuclein Transgenic (322) ??????????????? last entry will be the December 2012 DOB * GFP Transgenic (317) ??????????????? last entry will be the January 2013 DOB | mouse, elderly, mus, mutant mouse strain, old mouse, mouse model |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing has parent organization: NIA Scientific Resources |
Aging | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00207 | http://www.nia.nih.gov/ResearchInformation/ScientificResources/NIAMutantMouseAgingColony/ | SCR_007328 | Mutant Mouse Aging Colony | 2026-02-14 02:01:30 | 0 | ||||
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National Archive of Computerized Data on Aging (NACDA) Resource Report Resource Website 10+ mentions |
National Archive of Computerized Data on Aging (NACDA) (RRID:SCR_005876) | NACDA | data repository, storage service resource, portal, data or information resource, service resource, topical portal, database | Archive of data relevant to gerontological and aging research. Used to advance research on aging. Subjects include demographic, social, economic, and psychological characteristics of older adults, physical health and functioning of older adults, and health care needs of older adults. NACDA staff represents team of professional researchers, archivists and technicians who work together to obtain, process, distribute, and promote data relevant to aging research. | gerontology, secondary analysis, data set, age, intelligence, life span, productive, late adult human |
is recommended by: National Library of Medicine lists: Social Environment and Biomarkers of Aging Study in Taiwan lists: Advanced Cognitive Training for Independent and Vital Elderly (ACTIVE) is listed by: re3data.org is related to: Alameda County Health and Ways of Living Study is related to: Charleston Heart Study is related to: Census Microdata Samples Project is related to: Chinese Longitudinal Healthy Longevity Survey (CLHLS) is related to: Early Indicators of Later Work Levels Disease and Death (EI) - Union Army Samples Public Health and Ecological Datasets is related to: Cross-National Equivalent Files is related to: National Survey of Midlife Development in the United States is related to: Precursors of Premature Disease and Death is related to: New Beneficiary Data System is related to: National Survey of Self-Care and Aging is related to: Aging Status and Sense of Control (ASOC) has parent organization: Inter-university Consortium for Political and Social Research (ICPSR) is parent organization of: Established Populations for Epidemiologic Studies of the Elderly is parent organization of: National Survey of the Japanese Elderly is parent organization of: Piedmont Health Survey of the Elderly is parent organization of: Second Malaysian Family Life Survey is parent organization of: Longitudinal Study of Generations is parent organization of: Longitudinal Study of Elderly Mexican American Health is parent organization of: Matlab Health and Socio-Economic Survey is parent organization of: National Long Term Care Survey is parent organization of: National Nursing Home Survey Follow-Up is parent organization of: National Social Life Health and Aging Project (NSHAP) is parent organization of: National Survey of Families and Households |
Aging | NIA | Restricted | nlx_149438, r3d100010259 | https://www.icpsr.umich.edu/icpsrweb/NACDA/index.jsp https://doi.org/10.17616/R3Z31W |
SCR_005876 | , NACDA, National Archive of Computerized Data on Aging | 2026-02-14 02:01:12 | 21 | ||||
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Sageweb Resource Report Resource Website 1+ mentions |
Sageweb (RRID:SCR_010217) | Sageweb | community building portal, portal, data or information resource, database, topical portal | A resource center that distributes important resources to the biogerontological community and facilitates interactions and collaborative efforts amongst researchers to aid biogerontologists and enhance research into the basic biology of aging. They aim to make SAGEWEB the premier aging-related website containing a variety of different content types including: * Databases related to the basic biology of aging * Software and bioinformatic tools for aging-related science * Educational tools for teachers and students interested in aging biology * Primers on important topics in aging-related science * Videos and podcasts of aging-related topics * Aging-related discussion forums and blogs * Links to additional aging-related labs, conferences, and resources | biogerontology, video, podcast, blog, meeting resource, software resource, training material |
has parent organization: University of Washington; Seattle; USA is parent organization of: Lifespan Observations Database |
Aging | Ellison Medical Foundation ; NIA |
The community can contribute to this resource | nlx_156771 | SCR_010217 | Sageweb - Science of Aging, Sageweb.org | 2026-02-14 02:01:54 | 2 | |||||
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UC Davis Alzheimers Disease Center - Resources Resource Report Resource Website |
UC Davis Alzheimers Disease Center - Resources (RRID:SCR_010699) | UCD ADC Resources | biomaterial supply resource, material resource, tissue bank, brain bank | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. Support research in Alzheimer's disease (AD) offering pilot grants, recruitment of research subjects, access to database, tissue samples, and statistical and research study design consultation for investigators. The scientific effort of the program seeks to: promote research directed at understanding factors that influence the expression and progression of Alzheimer's disease; develop and maintain cohorts of carefully diagnosed and well characterized research subjects available for research studies on Alzheimer's disease and dementia; provide support to investigators in subject recruitment, clinical research, experimental design, and statistical analysis of data; and maintain a variety of samples (brain, DNA, serum) and an extensive electronic database suitable for developing new research and supporting existing programs. | brain, dna, serum, brain tissue, tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: UC Davis Alzheimer's Disease Center |
Alzheimer's disease, Aging | State of California's Department of Public Health ; Martinez Veterans Health Administration ; NIA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_82710 | SCR_010699 | University of California Davis Alzheimer's Disease Center - Resources | 2026-02-14 02:02:01 | 0 | |||||
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UC Davis Alzheimer's Disease Center Resource Report Resource Website |
UC Davis Alzheimer's Disease Center (RRID:SCR_010613) | UCD ADC | disease-related portal, data or information resource, portal, topical portal | We developed this Web site for researchers, primary care physicians, caregivers, students and those with a general interest in Alzheimer's Disease. Utilizing the many resources and web links, we think you will find this a useful portal to understanding the many facets of Dementia. The center is part of nationwide and statewide programs. The ADC has several important goals: * Educate health professionals and the public about Alzheimer's disease and related dementias * Conduct research in clinical and community populations into the causes and potential treatments for dementia * Advocate changes in health policy and practice that will enhance the recognition, treatment and management of dementia * Serve as an expert referral center for the diagnosis of dementia |
has parent organization: University of California at Davis; California; USA is parent organization of: UC Davis Alzheimers Disease Center - Resources |
Alzheimer's disease | State of California Department of Public Health ; Martinez Veterans Health Administration ; NIA |
nlx_52964 | SCR_010613 | ADC, University of California Davis Alzheimer's Disease Center | 2026-02-14 02:01:47 | 0 | |||||||
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Michigan Imputation Server Resource Report Resource Website 100+ mentions |
Michigan Imputation Server (RRID:SCR_017579) | data access protocol, software resource, web service, service resource | Web server to implement whole genotype imputation workflow for efficient parallelization of computationally intensive tasks. Service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity. Used to find haplotype segments and reference panel of sequenced genomes, assign genotypes at untyped markers, improve genome coverage, facilitate comparison and combination of studies that use different marker panels, increase power to detect genetic association, and guide fine mapping. | Whole, genotype, imputation, workflow, parallelization, task, find, haplotype, segment, reference, panel, sequence, genome, mapping | has parent organization: University of Michigan; Ann Arbor; USA | NHGRI HG007022; NHLBI HL117626; NHGRI HG000376; NIDA R01 DA037904; Austrian Science Fund ; European Community Seventh Framework Programme ; NIA |
PMID:27571263 | Restricted | https://github.com/genepi/imputationserver | SCR_017579 | Next Generation Genotype Imputation Service | 2026-02-14 02:03:29 | 156 | ||||||
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Northwestern CNADC Tissue Bank / Neuropathology Core Resource Report Resource Website |
Northwestern CNADC Tissue Bank / Neuropathology Core (RRID:SCR_013178) | biomaterial supply resource, material resource, tissue bank, brain bank | Tissue bank for collecting, cataloging and storing postmortem brain tissue samples from subjects with and without neurological disorders. Specimens are available for research on cognitive impairment, Alzheimer's, dementia and other disorders along with clinical data such as demographic information, health and family history and neuropsychological test scores. The bank provides services to distribute postmortem brain tissue and other samples to investigators for use in research that will provide qualitative and quantitative diagnostic information to physicians, families, and researchers. | brain tissue, brain, tissue, plasma, blood, dna, cerebral spinal fluid, paraformaldehyde-fixed, frozen, paraffin block, unfixed, late adult human, autopsy, post-mortem, clinical dementia rating scale, mini mental state examination, neuropathology, clinical data, alzheimer's disease, dementia, normal control, non-demented control, dementia with lewy body, frontotemporal lobar degeneration, pick disease, corticobasal degeneration, tauopathy, progressive supranuclear palsy, tangle-predominant senile dementia, amyotrophic lateral sclerosis, motor neuron disease, vascular dementia, mild cognitive impairment, research, brain bank, tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Northwestern University Cognitive Neurology and Alzheimers Disease Center |
Alzheimer's disease, Dementia, Dementia with Lewy body, Frontotemporal lobar degeneration, Pick disease, Corticobasal degeneration, Tauopathy, Progressive Supranuclear Palsy, Tangle-predominant senile dementia, Amyotrophic Lateral Sclerosis, Motor Neuron Disease, Vascular dementia, Mild cognitive impairment, Aging | NIA P30 AG13854 | Available to the research community | nlx_144054 | http://www.brain.northwestern.edu/mdad/neuropathology.html | SCR_013178 | Northwestern University Cognitive Neurology and Alzheimer's Disease Center Tissue/Neuropathology Core, Northwestern University CNADC Tissue/Neuropathology Core, Northwestern's Cognitive Neurology and Alzheimers Disease Center Tissue/Neuropathology Core, Northwestern Tissue/Neuropathology Core, Northwestern Neuropathology Core of CNADC, Northwestern Cognitive Neurology and Alzheimer's Disease Center Tissue/Neuropathology Core, Northwestern Cognitive Neurology Alzheimer's Disease Center Tissue/Neuropathology Core, Northwestern CNADC Tissue / Neuropathology Core, Northwestern University CNADC Tissue / Neuropathology Core | 2026-02-14 02:02:22 | 0 | |||||
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Skyline Resource Report Resource Website 1000+ mentions |
Skyline (RRID:SCR_014080) | data analysis software, software resource, data processing software, software application | Software tool as Windows client application for targeted proteomics method creation and quantitative data analysis. Open source document editor for creating and analyzing targeted proteomics experiments. Used for large scale quantitative mass spectrometry studies in life sciences. | Proteomics, SRM, MRM, DDA, DIA, shotgun, mass, spectrometry, data, analysis, quantitative |
uses: MSstats is related to: ProteoWizard has parent organization: University of Washington; Seattle; USA works with: PanoramaWeb |
NCI U24 CA126479; NIDDK R01 DK069386; NCRR P41 RR011823; NIA P30 AG013280; NHLBI R01 HL082747 |
PMID:20147306 | Free, Available for download, Freely available | SCR_014080 | 2026-02-14 02:02:56 | 2805 | ||||||||
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AMP-AD Knowledge Portal Resource Report Resource Website 10+ mentions |
AMP-AD Knowledge Portal (RRID:SCR_016316) | AMP AD | data repository, storage service resource, service resource | Repository for distribution of various types of molecular data from human, cell-based and animal model biosamples, analytical results and research tools generated through multiple NIA-supported programs. Currently Portal supports AMP-AD Target Discovery and Preclinical Validation and MOVE-AD Consortia and translational center, MODEL-AD. | multi-omic data, Alezheimer's disease, | is recommended by: National Library of Medicine | NIA | Restricted | SCR_016316 | AMP-AD, AMP-AD Knowledge Portal | 2026-02-14 02:03:02 | 10 | |||||||
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PAGODA Resource Report Resource Website |
PAGODA (RRID:SCR_017099) | data analysis software, software resource, data processing software, software application | Software tool for analyzing transcriptional heterogeneity to detect statistically significant ways in which measured cells can be classified. Used to resolve multiple, potentially overlapping aspects of transcriptional heterogeneity by testing gene sets for coordinated variability among measured cells. | heterogeneity, transcriptional, detect, statistically, cell, classified, overlapping, gene, set, coordinated, variability |
is related to: pagoda2 has parent organization: Harvard University; Cambridge; United States |
Ellison Medical Foundation ; NSF NSF-14-532; NSF DGE1144152; NIMH U01 MH098977; NINDS R01 NS084398; NIA T32 AG00216 |
PMID:26780092 | Free, Available for download, Freely available | http://hms-dbmi.github.io/scde/index.html | SCR_017099 | Pathway And Gene set OverDispersion Analysis, pagoda | 2026-02-14 02:03:08 | 0 | ||||||
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proMODMatcher Resource Report Resource Website 1+ mentions |
proMODMatcher (RRID:SCR_017219) | data analysis software, software resource, data processing software, software application | Software tool as probabilistic multi omics data matching procedure to curate data, identify and correct data annotation and errors in large databases. Used to check potential labeling errors in profiles where number of cis relationships is small, such as miRNA and RPPA profiles. | probabilistic, matching, curate, omic, data, identify, correct, error, large, database, analysis, sample, label, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: Icahn School of Medicine at Mount Sinai; New York; USA |
NHGRI U01 HG008451; NIA R01 AG046170; NIAID U19 AI118610 |
biotools:modmatcher | https://bio.tools/modmatcher | SCR_017219 | probabilisticMulti Omics DataMatcher | 2026-02-14 02:03:16 | 1 | |||||||
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MAJIQ Resource Report Resource Website 10+ mentions |
MAJIQ (RRID:SCR_016706) | MAJIQ, | data processing software, data analysis software, software toolkit, software application, software resource | Software package to detect and quantify local splicing variations (LSV) from RNA-Seq data. Used to automatically detect and downweight outliers in RNA-Seq datasets with replicates for differential splicing (SD) analysis. | detect, quantify, local, splicing, variation, RNA-Seq, data, replicate, differential, analysis | has parent organization: University of Pennsylvania; Philadelphia; USA | NIA R01 AG046544; Penn Institute for Biomedical Informatics Pilot |
PMID:29236961 | Free, Available for download, Freely available, Tutorial available | SCR_016706 | MAJIQ, MAJIQ/Viola, Modeling Alternative Junction Inclusion Quantification | 2026-02-14 02:03:19 | 30 | ||||||
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hfoGUI Resource Report Resource Website 1+ mentions |
hfoGUI (RRID:SCR_016726) | hfoGUI | data visualization software, data processing software, software repository, data analysis software, software application, software resource, signal processing software | Graphical user interface to visualize EEG data. The applications can vary from scoring High Frequency Oscillations, to observing Theta and Gamma Synchrony. | graphical, user, interface, python, processing, data, EEG, LFP, frequency, oscillation | Alzheimer’s Association 2015-NIRG-341570; NIA R01 AG050425 |
Free, Available for download, Freely available | SCR_016726 | hfoGraphical User Interface | 2026-02-14 02:03:19 | 1 | ||||||||
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Joseph and Kathleen Bryan Alzheimer's Disease Research Center Resource Report Resource Website |
Joseph and Kathleen Bryan Alzheimer's Disease Research Center (RRID:SCR_005025) | patient-support portal, portal, data or information resource, research forum portal, disease-related portal, topical portal | An Alzheimer's disease center (ADC) that offers support services for families caring for persons with memory disorders, community outreach and education programs, in addition to its clinical and basic research activities. Information on current scientific and clinical findings is offered to the general public, medical and scientific community. An important emphasis of the Bryan ADRC is to advance basic medical discovery concerning AD and related dementias. This basic science mission is facilitated through the DNA cell repository located in the Institute of Genome Sciences and Policy (IGSP) and the Bryan ADRC brain donation program of the Kathleen Price Bryan Brain Bank. These affiliated Bryan ADRC programs provide a source of fresh brain tissue. | alzheimer's disease, memory disorder, clinical trial, dementia, human brain |
has parent organization: Duke University School of Medicine; North Carolina; USA is parent organization of: Duke University Kathleen Price Bryan Brain Bank |
Alzheimer's disease, Memory disorder, Dementia | NIA | Public, Samples are available to the research community | nlx_144012 | SCR_005025 | Bryan Alzheimer's Disease Research Center, Joseph & Kathleen Bryan Alzheimer's Disease Research Center, Bryan ADRC, Joseph and Kathleen Bryan Alzheimer's Disease Research Center | 2026-02-14 02:01:01 | 0 | ||||||
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ADNI - Alzheimer's Disease Neuroimaging Initiative Resource Report Resource Website 1000+ mentions |
ADNI - Alzheimer's Disease Neuroimaging Initiative (RRID:SCR_003007) | ADNI | data repository, storage service resource, data or information resource, service resource, database | Database of the results of the ADNI study. ADNI is an initiative to develop biomarker-based methods to detect and track the progression of Alzheimer's disease (AD) that provides access to qualified scientists to their database of imaging, clinical, genomic, and biomarker data. | mri, alzheimer’s disease, cognitive assessment, neuroimaging, disease study, disease progression, biomarker, FASEB list |
is used by: Biomarkers Across Neurodegenerative Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Consortia-pedia is related to: Alzheimers Association is related to: Alzheimers Drug Discovery Foundation |
Alzheimer's disease, Mild Cognitive Impairment, Elderly control, Traumatic brain injury, Post-Traumatic Stress Disorder, Aging | NIA U01AG024904; NIA P30AG010129; NIA K01AG030514 |
Application required, Account required, This resource is available to the scientific community | SciRes_000144, nif-0000-00516 | http://adni.loni.usc.edu/ http://www.nitrc.org/projects/adni/ http://www.adni3.org/ |
http://www.loni.ucla.edu/ADNI/ | SCR_003007 | Alzheimers Disease Neuroimaging Initiative, Alzheimer's Disease Neuroimaging Initiative (ADNI), Alzheimer's Disease Neuroimaging Initiative | 2026-02-14 02:00:37 | 3850 | |||
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NIH NeuroBioBank Resource Report Resource Website 100+ mentions |
NIH NeuroBioBank (RRID:SCR_003131) | NBB | biomaterial supply resource, material resource, tissue bank, brain bank | National resource for investigators utilizing human post-mortem brain tissue and related biospecimens for their research to understand conditions of the nervous system. Federated network of brain and tissue repositories in the United States that collects, evaluates, stores, and makes available to researchers, brain and other tissues in a way that is consistent with the highest ethical and research standards. The NeuroBioBank ensures protection of the privacy and wishes of donors. Provides information to the public about the need for tissue donation and how to register as a donor. | human post-mortem brain tissue, human brain, brain tissue, tissue, adult, child, brain donation, human post-mortem brain tissue and related biospecimens, |
is used by: BRAIN Initiative Cell Atlas Network is used by: BICCN is listed by: One Mind Biospecimen Bank Listing has parent organization: National Institutes of Health |
Brain disorder, Autism spectrum disorder, Autism, Major Depressive Disorder, Schizophrenia, Multiple Sclerosis, Epilepsy, Traumatic brain injury | NIMH ; NINDS ; NICHD ; NIA ; NIDA |
PMID:29496155 | Free, Freely available | nlx_156783 | SCR_003131 | NeuroBioBank, National Institutes of Health NeuroBioBank | 2026-02-14 02:00:30 | 177 | ||||
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Automatic Analysis Resource Report Resource Website 1+ mentions |
Automatic Analysis (RRID:SCR_003560) | aa | data processing software, data analysis software, workflow software, software toolkit, time-series analysis software, software application, image processing software, software resource, image analysis software | Integration framework for major open source packages in neuroimaging including SPM, FSL, FreeSurfer, EEGLAB, and Fieldtrip. Efficient neuroimaging workflows and parallel processing using Matlab and XML. Addresses challenges of processing multimodal datasets, like combining anatomy, functional MRI, diffusion, and EEG, to yield integrated views of brain. Allows to design, execute, and share pipelines utilizing multiple open source packages. Supports parallelized execution to address challenges of large cohort studies and provides quality control offering group statistics and reporting facilities to help identify outlier subjects and erroneous processing steps. | Neuroimaging workflows, processing multimodal datasets, brain integrated views, fmri, eeg, meg, dwi, morphometry, parallel-processing, scripting, record-keeping, |
uses: FreeSurfer uses: MATLAB uses: SPM |
NSERC Discovery and the Canada Excellence Research Chair (CERC) in Cognitive Neuroimaging ; NSERC/CIHR CHRP ; NIA R01 AG038490; NIDCD R01 DC013063 |
PMID:25642185 | nlx_157695 | SCR_003560 | automaticanalysis, AutomaticAnalysis | 2026-02-14 02:00:50 | 8 | ||||||
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LONI Visualization Tool Resource Report Resource Website |
LONI Visualization Tool (RRID:SCR_000765) | LONI Viz, LONI_Viz, LOVE | data visualization software, software resource, data processing software, software application | A versatile 1D, 2D and 3D data viewer geared for cross-platform visualization of stereotactic brain data. It is a 3-D viewer that allows volumetric data display and manipulation of axial, sagittal and coronal views. It reads Analyze, Raw-binary and NetCDF volumetric data, as well as, Multi-Contour Files (MCF), LWO/LWS surfaces, atlas hierarchical brain-region labelings ( Brain Trees). It is a portable Java-based software, which only requires a Java interpreter and a 64 MB of RAM memory to run on any computer architecture. LONI_Viz allows the user to interactively overlay and browse through several data volumes, zoom in and out in the axial, sagittal and coronal views, and reports the intensities and the stereo-tactic voxel and world coordinates of the data. Expert users can use LONI_Viz to delineate structures of interest, e.g., sulcal curves, on the 3 cardinal projections of the data. These curves then may be use to reconstruct surfaces representing the topological boundaries of cortical and sub-cortical regions of interest. The 3D features of the package include a SurfaceViewer and a full real-time VolumeRenderer. These allow the user to view the relative positions of different anatomical or functional regions which are not co-planar in any of the axial, sagittal or coronal 2D projection planes. The interactive part of LONI_Viz features a region drawing module used for manual delineation of regions of interest. A series of 2D contours describing the boundary of a region in projection planes (axial, sagittal or coronal) could be used to reconstruct the surface-representation of the 3D outer shell of the region. The latter could then be resliced in directions complementary to the drawing-direction and these complementary contours could be loaded in all tree cardinal views. In addition the surface object could be displayed using the SurfaceViewer. A pre-loading data crop and sub-sampling module allows the user to load and view practically data of any size. This is especially important when viewing cryotome, histological or stained data-sets which may reach 1GB (109 bytes) in size. The user could overlay several pre-registered volumes, change intensity colors and ranges and the inter-volume opacities to visually inspect similarities and differences between the different subjects/modalities. Several image-processing aids provide histogram plotting, image-smoothing, etc. Specific Features: * Region description DataBase * Moleculo-genetic database * Brain anatomical data viewer * BrainMapper tool * Surface (LightWave objects/scenes) and Volume rendering tools * Interactive Contour Drawing tool Implementation Issues: * Applet vs. Application - the software is available as both an applet and a standalone application. The former could be used to browse data from within the LONI database, however, it imposes restrictions on file-size, Internet connection and network-bandwidth and client/server file access. The later requires a local install and configuration of the LONI_Viz software * Extendable object-oriented code (Java), computer architecture independent * Complete online software documentation is available at http://www.loni.ucla.edu/LONI_Viz and a Java-Class documentation is available at http://www.loni.ucla.edu/~dinov/LONI_Vis.dir/doc/LONI_Viz_Java_Docs.html | brain, atlas, visualization, gene mapping, atlas application, magnetic resonance, surface analysis |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: Laboratory of Neuro Imaging |
Aging | NIA P50 AG16570; NLM 2R01 LM05639-06; NIA K08 AG100784; NCRR 2 P41 RR13642; NIMH 5 P01 MN52176; NSF DUE 0442992; NCRR U52 RR021813 |
PMID:16598642 | Free, Available for download, Freely available | nif-0000-23313 | http://www.nitrc.org/projects/incf_loni-viz | http://www.loni.ucla.edu/Software/LOVE | SCR_000765 | LONI Visualization Environment, LONI Viz environment, LOVE | 2026-02-14 01:59:48 | 0 | ||
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Functional Regression Analysis of DTI Tract Statistics Resource Report Resource Website |
Functional Regression Analysis of DTI Tract Statistics (RRID:SCR_002293) | FRATS | software resource, image analysis software, data processing software, software application | Software for the analysis of multiple diffusion properties along fiber bundle as functions in an infinite dimensional space and their association with a set of covariates of interest, such as age, diagnostic status and gender, in real applications. The resulting analysis pipeline can be used for understanding normal brain development, the neural bases of neuropsychiatric disorders, and the joint effects of environmental and genetic factors on white matter fiber bundles. | computational neuroscience, imaging genomics, magnetic resonance, regression analysis, dti, statistics |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
NSF BCS-08-26844; NCRR UL1-RR025747-01; NIMH MH086633; NIA AG033387; NIMH MH064065; NICHD HD053000; NIMH MH070890; NINDS R01NS055754; NIBIB U54 EB005149-01 |
PMID:20335089 | Academic Free License | nlx_155629 | SCR_002293 | Functional Regression Analysis of DTI | 2026-02-14 02:05:25 | 0 |
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