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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Cambridge Brain Activation Resource Report Resource Website 10+ mentions |
Cambridge Brain Activation (RRID:SCR_007109) | CamBA | data processing software, workflow software, software toolkit, software application, software resource, image analysis software | Suite of programs developed for fMRI analysis in a Virtual Pipeline Laboratory facilitates combining program modules from different software packages into processing pipelines to create analysis solutions which are not possible with a single software package alone. Current pipelines include fMRI analysis, statistical testing based on randomization methods and fractal spectral analysis. Pipelines are continually being added. The software is mostly written in C. This fMRI analysis package supports batch processing and comprises the following general functions at the first level of individual image analysis: movement correction (interpolation and regression), time series modeling, data resampling in the wavelet domain, hypothesis testing at voxel and cluster levels. Additionally, there is code for second level analysis - group and factorial or ANOVA mapping - after co-registration of voxel statistic maps from individual images in a standard space. The main point of difference from other fMRI analysis packages is the emphasis throughout on the use of data resampling (permutation or randomization) as a basis for inference on individual, group and factorial test statistics at voxel and cluster levels of resolution. | analysis, brain, anova, resampling, statistical, wavelet, fmri, pipeline, affine warp, algorithm or reusable library, application, c, image-to-template, java, linux, macos, magnetic resonance, nifti-1, posix/unix-like, registration, regression, spatial transformation, spectral analysis, statistical operation, temporal transformation, time domain analysis, unix shell, warping, wavelet transformation, web environment |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: University of Cambridge; Cambridge; United Kingdom |
GlaxoSmithKline ; Human Brain Project ; NIMH ; NIBIB |
GNU General Public License | nif-0000-00267 | http://www-bmu.psychiatry.cam.ac.uk/software/ | SCR_007109 | 2026-02-14 02:01:27 | 11 | ||||||
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fMRI Data Center Resource Report Resource Website 10+ mentions |
fMRI Data Center (RRID:SCR_007278) | fMRIDC | data repository, storage service resource, data or information resource, service resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 25, 2013 Public curated repository of peer reviewed fMRI studies and their underlying data. This Web-accessible database has data mining capabilities and the means to deliver requested data to the user (via Web, CD, or digital tape). Datasets available: 107 NOTE: The fMRIDC is down temporarily while it moves to a new home at UCLA. Check back again in late Jan 2013! The goal of the Center is to help speed the progress and the understanding of cognitive processes and the neural substrates that underlie them by: * Providing a publicly accessible repository of peer-reviewed fMRI studies. * Providing all data necessary to interpret, analyze, and replicate these fMRI studies. * Provide training for both the academic and professional communities. The Center will accept data from those researchers who are publishing fMRI imaging articles in peer-reviewed journals. The goal is to serve the entire fMRI community. | fmri, cognitive, cortex, mri, talairach, neuroimaging, cognitive neuroscience, brain, structure, function, magnetic resonance, intellect, image collection, data set |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: re3data.org has parent organization: University of California at Santa Barbara; California; USA |
NSF ; W. M. Keck Foundation ; NIMH ; Sun Microsystems Center of Excellence |
PMID:11545705 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00025 | http://www.fmridc.org/ | SCR_007278 | The fMRI Data Center | 2026-02-14 02:01:20 | 16 | ||||
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National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) Resource Report Resource Website 50+ mentions |
National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) (RRID:SCR_007314) | NIAGADS | data repository, storage service resource, data set, data or information resource, service resource, database | National genetics data repository facilitating access to genotypic and phenotypic data for Alzheimer's disease (AD). Data include GWAS, whole genome (WGS) and whole exome (WES), expression, RNA Seq, and CHIP Seq analyses. Data for the Alzheimer’s Disease Sequencing Project (ADSP) are available through a partnership with dbGaP (ADSP at dbGaP). Repository for many types of data generated from NIA supported grants and/or NIA funded biological samples. Data are deposited at NIAGADS or NIA-approved sites. Genetic Data and associated Phenotypic Data are available to qualified investigators in scientific community for secondary analysis. | genetics, alzheimer's disease, genome-wide association study, neurodegenerative disease, genotype, phenotype, late adult human, dna marker, dna sequencing, rna expression, rna, dna, gene |
is recommended by: National Library of Medicine is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NIH Data Sharing Repositories is related to: Allen Institute for Brain Science has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
Alzheimer's disease, Late-onset Alzheimer's disease, Aging | NIH Blueprint for Neuroscience Research ; NIA U24 AG041689; NIA 3U24AG041689 |
nif-0000-00179 | http://www.nitrc.org/projects/niagads http://alois.med.upenn.edu/niagads/ | SCR_007314 | National Institute on Aging, NIA Genetics of Alzheimer's Disease Data Storage Site, Genetics of Alzheimer’s Disease Data Storage Site | 2026-02-14 02:01:24 | 60 | |||||
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NeuroLens Resource Report Resource Website 1+ mentions |
NeuroLens (RRID:SCR_007372) | NeuroLens | data visualization software, data processing software, software application, image processing software, software resource, image analysis software | An integrated environment for the analysis and visualization of functional neuroimages. It is intended to provide extremely fast and flexible image processing, via an intuitive user interface that encourages experimentation with analysis parameters and detailed inspection of both raw image data and processing results. All processing operations in NeuroLens are built around a Plugin architecture, making it easy to extend its functionality. NeuroLens runs on Apple computers based on the G4, G5, or Intel chipsets and running MacOSX 10.4 (Tiger) or later. It is available free for academic and non-profit research use. * Operating System: MacOS * Programming Language: Objective C * Supported Data Format: AFNI BRIK, ANALYZE, COR, DICOM, MGH/MGZ, MINC, Other Format | image-to-image, linear, temporal convolution - deconvolution, multivariate analysis, neuroimaging, fmri, brain structure, neural structure, brain, temporal convolution, temporal deconvolution, afni brik, analyze, cor, dicom, image display, macos, mgh/mgz, minc, magnetic resonance, objective c, registration, regression, rendering, software, spatial transformation, statistical operation, surface rendering, temporal transformation, three dimensional display, visualization |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: University of Montreal; Quebec; Canada |
MGH CSRL License, - free for academic and non-profit research use. | nif-0000-00333 | http://www.nitrc.org/projects/nldo | SCR_007372 | 2026-02-14 02:01:31 | 9 | |||||||
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Textpresso Resource Report Resource Website 10+ mentions |
Textpresso (RRID:SCR_008737) | Textpresso | text-mining software, data or information resource, software application, software resource, database | An information extracting and processing package for biological literature that can be used online or installed locally via a downloadable software package, http://www.textpresso.org/downloads.html Textpresso's two major elements are (1) access to full text, so that entire articles can be searched, and (2) introduction of categories of biological concepts and classes that relate two objects (e.g., association, regulation, etc.) or describe one (e.g., methods, etc). A search engine enables the user to search for one or a combination of these categories and/or keywords within an entire literature. The Textpresso project serves the biological and biomedical research community by providing: * Full text literature searches of model organism research and subject-specific articles at individual sites. Major elements of these search engines are (1) access to full text, so that the entire content of articles can be searched, and (2) search capabilities using categories of biological concepts and classes that relate two objects (e.g., association, regulation, etc.) or identify one (e.g., cell, gene, allele, etc). The search engines are flexible, enabling users to query the entire literature using keywords, one or more categories or a combination of keywords and categories. * Text classification and mining of biomedical literature for database curation. They help database curators to identify and extract biological entities and facts from the full text of research articles. Examples of entity identification and extraction include new allele and gene names and human disease gene orthologs; examples of fact identification and extraction include sentence retrieval for curating gene-gene regulation, Gene Ontology (GO) cellular components and GO molecular function annotations. In addition they classify papers according to curation needs. They employ a variety of methods such as hidden Markov models, support vector machines, conditional random fields and pattern matches. Our collaborators include WormBase, FlyBase, SGD, TAIR, dictyBase and the Neuroscience Information Framework. They are looking forward to collaborating with more model organism databases and projects. * Linking biological entities in PDF and online journal articles to online databases. They have established a journal article mark-up pipeline that links select content of Genetics journal articles to model organism databases such as WormBase and SGD. The entity markup pipeline links over nine classes of objects including genes, proteins, alleles, phenotypes, and anatomical terms to the appropriate page at each database. The first article published with online and PDF-embedded hyperlinks to WormBase appeared in the September 2009 issue of Genetics. As of January 2011, we have processed around 70 articles, to be continued indefinitely. Extension of this pipeline to other journals and model organism databases is planned. Textpresso is useful as a search engine for researchers as well as a curation tool. It was developed as a part of WormBase and is used extensively by C. elegans curators. Textpresso has currently been implemented for 24 different literatures, among them Neuroscience, and can readily be extended to other corpora of text. | literature, extract, process, bibliographic resource, database application, linux, macos, pdf, perl, posix/unix-like, sh, bash, unix shell, web service, search engine, curation tool, dicty, neuroscience, regulon db, ecoliwiki, ecocyc, curation, text-mining |
is listed by: OMICtools is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: WormBase is related to: Dictyostelium discoideum genome database |
NHGRI HG004090 | PMID:18949581 PMID:15383839 |
Textpresso License | nlx_143812, OMICS_01199 | http://www.nitrc.org/projects/textpresso-2-0/ | SCR_008737 | Text presso, Textpresso - literature search engine | 2026-02-14 02:01:45 | 10 | ||||
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DFBIdb Resource Report Resource Website |
DFBIdb (RRID:SCR_009456) | DFBIdb | data management software, software resource, software application | A suite of tools for efficient management of neuroimaging project data. Specifically, DFBIdb was designed to allow users to quickly perform routine management tasks of sorting, archiving, exploring, exporting and organising raw data. DFBIdb was implemented as a collection of Python scripts that maintain a project-based, centralised database that is based on the XCEDE 2 data model. Project data is imported from a filesystem hierarchy of raw files, which is an often-used convention of imaging devices, using a single script that catalogues meta-data into a modified XCEDE 2 data model. During the import process data are reversibly anonymised, archived and compressed. The import script was designed to support multiple file formats and features an extensible framework that can be adapted to novel file formats. Graphical user interfaces are provided for data exploration. DFBIdb includes facilities to export, convert and organise customisable subsets of project data according to user-specified criteria. | magnetic resonance, neuroimaging, python, data management software, project management | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:20838938 | GNU General Public License | nlx_155602 | SCR_009456 | 2026-02-14 02:01:40 | 0 | |||||||
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DIAMOND Resource Report Resource Website 1000+ mentions |
DIAMOND (RRID:SCR_009457) | DIAMOND | software resource | Software to: view dicom files and assemble them into 3D volumes. View and convert between Analyze, Nifti, and Interfile. Classify and organize dicoms and 3D volumes using metadata. Search and report on a collection of scans. | reusable library, analyze, database application, dicom, format conversion, image display, image reconstruction, magnetic resonance, nifti, python, software, visualization, workflow, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
nlx_155603 | SCR_009457 | UC Davis IDeA Lab Applications for Management Of Neuroimaging Data | 2026-02-14 02:01:50 | 4152 | ||||||||
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CBS High-Res Brain Processing Tools Resource Report Resource Website 10+ mentions |
CBS High-Res Brain Processing Tools (RRID:SCR_009452) | CBS High-Res Brain Processing Tools | software resource | A fully automated processing pipeline for cortical analysis of structural MR images at a resolution of up to 400������m, including skull stripping, whole brain segmentation, cortical extraction, surface inflation and mapping, as well as dedicated tools for profile estimation across the cortical thickness. The tools are released as a set of plug-ins for the MIPAV software package and the JIST pipeline environment. They are therefore cross-platform and compatible with a wide variety of file formats. | magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: JIST: Java Image Science Toolkit is related to: MIPAV: Medical Image Processing and Visualization |
Free | nlx_155596 | SCR_009452 | 2026-02-14 02:01:50 | 20 | ||||||||
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CCSeg - Corpus Callosum Segmentation Resource Report Resource Website 1+ mentions |
CCSeg - Corpus Callosum Segmentation (RRID:SCR_009453) | CCSeg | data processing software, software application, segmentation software, software resource, image analysis software | An open-source C++-based application that allows automatic as well as user-interactive segmentation of the Corpus Callosum. Via a Qt-based graphical user interface, CCSeg also performs semi-automatic segmentation. | c++, magnetic resonance, segmentation, shape analysis, corpus callosum |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
PMID:9873919 | BSD License | nlx_155597 | SCR_009453 | Corpus Callosum Segmentation Tool | 2026-02-14 02:01:49 | 1 | ||||||
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BrainSolution Resource Report Resource Website |
BrainSolution (RRID:SCR_009447) | BrainSolution | data processing software, software application, segmentation software, software resource, image analysis software | A collection of tools for MRI T1 brain image segmentation in the Windows environment. It helps construct a complete pipeline with necessary preprocessing and postprocessing procedures besides brainparser, the core program of our fast brain segmentation. The execution of the whole pipeline can be completed in 2 hours with good segmentation results. Execution requires: FSL | analyze, c++, console (text based), labeling, linux, microsoft, magnetic resonance, posix/unix-like, region of interest, segmentation, sh/bash, unix shell, windows, windows nt/2000, windows vista, workflow |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Laboratory of Neuro Imaging |
LONI Software License | nlx_155591 | SCR_009447 | 2026-02-14 02:01:51 | 0 | ||||||||
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Fluid Registration and Atlas Toolkit Resource Report Resource Website |
Fluid Registration and Atlas Toolkit (RRID:SCR_009478) | FRAT | data processing software, software library, software toolkit, software application, registration software, software resource, image analysis software | THIS RESOURCE IS NO LONGER IN SERVICE, documented on November 05, 2013. It has been superseeded by the CALATK, available here http://www.calatk.org c++ libraries and applications for performing fluid registration based operations on 2D and 3D images. The registration method is based on the large displacement diffeomorphic mapping (LDDM) registration method and implements discretized fluid registration. This registration method is then applied to time series analysis, cross-sectional atlas building, and longitudinal atlas building. The individual tool components are: * LDDM: Fluid registration between two images. * TimeSeries: Time series analysis of longitudinal data for a single subject. * AtlasBuilder: Cross-sectional atlas building for a population of images. * LongitudinalAtlasBuilder: Longitudinal atlas building for a population of subjects, each with a longitudinal data set. * FRATUtils: A collection of utility functions for working with volumes and time series files | atlas application, c++, console (text based), image-to-image, linux, magnetic resonance, nonlinear warp, nrrd, posix/unix-like, registration, spatial transformation, warping |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: CalaTK |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155625 | SCR_009478 | 2026-02-14 02:01:51 | 0 | ||||||||
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FBIRN Image Processing Scripts Resource Report Resource Website 1+ mentions |
FBIRN Image Processing Scripts (RRID:SCR_009471) | FIPS | data management software, software resource, software application | A FSL package for the comprehensive management of large-scale multi-site fMRI projects, including data storage, retrieval, calibration, analysis, multi-modal integration, and quality control. | analyze, csh/tcsh, database application, dicom, linux, macos, magnetic resonance, posix/unix-like, statistical operation, unix shell, web environment |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Function BIRN |
BIRN License, BSD License | nlx_155618 | SCR_009471 | FBIRN Image Processing Scripts (FIPS) | 2026-02-14 02:01:50 | 5 | |||||||
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DW-MRI registration in FSL Resource Report Resource Website 1+ mentions |
DW-MRI registration in FSL (RRID:SCR_009461) | DW-MRI registration in FSL | data processing software, software application, registration software, software resource, image analysis software | This code registers linearly and non-linearly Diffusion Weighted Magnetic Resonance Images (DW-MRIs) by extending FLIRT (linear registration of 3D scalar volumes) and FNIRT (non-linear registration of 3D scalar volumes) in the FMRIB Software Library (FSL) to work with 4D volumes. The basis for registering DW-MRIs is the concept of Angular Interpolation (Tao, X., Miller, J. V., 2006. A method forregistering diffusion weighted magnetic resonance images. In: MICCAI. Vol. 9. pp. 594?602), which is implemented and extended to non-linear registration, based on the FLIRT and FNIRT models in FSL. See http://www.frontiersin.org/Brain_Imaging_Methods/10.3389/fnins.2013.00041/abstract. The code does not overwrite FLIRT, FNIRT or any of the FSL C++ code. It is added as FLIRT4D, FNIRT4D and supporting cost functions. The makefiles will however be overwritten to compile the new code, without affecting any version of FSL. | magnetic resonance, diffusion weighted magnetic resonance image |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: FSL |
PMID:23596381 | FSL License | nlx_155607 | SCR_009461 | 2026-02-14 02:01:51 | 2 | |||||||
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DbGaP Cleaner Resource Report Resource Website |
DbGaP Cleaner (RRID:SCR_009462) | software resource, workflow software, data processing software, software application | Tool to assist site staff with curation of data dictionary, data item, and subject item files for preparation to uploading and sharing data with DbGaP resource. | gpl-style open source, data, curation, dictionary, sharing, site, tool, workflow software |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NCBI database of Genotypes and Phenotypes (dbGap) |
nlx_155609 | SCR_009462 | DbGaP_Cleaner | 2026-02-14 02:01:40 | 0 | |||||||||
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BRAINSMush Resource Report Resource Website |
BRAINSMush (RRID:SCR_009485) | BRAINSMush | data processing software, software application, segmentation software, software resource, image analysis software | Tool to generate brain volume mask from input of T1 and T2-weighted images alongside a region of interest brain mask. This volume mask omits dura, skull, eyes, etc. The program is built upon ITK and uses the Slicer3 execution model framework to define the command line arguments and can be fully integrated with Slicer3 using the module discovery capabilities of Slicer3. | analyze, application, bsd license, bsd/mit-style open source license, c++, console (text based), dicom, magnetic resonance, nifti, nrrd, segmentation | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | BSD License | nlx_155702 | http://www.nitrc.org/projects/brainsmush | SCR_009485 | 2026-02-14 02:01:51 | 0 | |||||||
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Fiber Optic Button Response System Resource Report Resource Website 10+ mentions |
Fiber Optic Button Response System (RRID:SCR_009577) | instrument resource | Instrument that accurately gathers participant responses and verifies signals. The Celeritas Series response units are assembled using high-impact, chemical resistant, medical grade plastic. The response units include a tactile indicator to ensure correct finger placement during experiments and comfortably attach to the participant?s wrists. The units communicate button presses through fiber optic cabling which connects to a Fiber Optic Interface Console located in the control room through an available wave guide. The interface console provides real-time feedback of participant responses via LED indicators and includes a set of switches which can be used to make responses for the participant as needed. | eeg, meg, electrocorticography, experiment control, hardware, magnetic resonance, response monitoring, instrument, equipment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | nlx_155759 | http://www.nitrc.org/projects/fobrs https://pstnet.com/wp-content/uploads/2021/04/Celeritas-Operator-Manual.pdf |
SCR_009577 | Celeritas Fiber Optic Response System | 2026-02-14 02:01:52 | 22 | ||||||||
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FIV Resource Report Resource Website |
FIV (RRID:SCR_009575) | FIV | data visualization software, software resource, data processing software, software application | A tool for visualizing functional and anatomic MRI data. | analyze, dicom, image display, java, linux, macos, microsoft, minc, magnetic resonance, nifti, posix/unix-like, sunos/solaris, visualization, web environment, win32 (ms windows), mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
BSD License | nlx_155756 | http://www.nitrc.org/projects/fiv | SCR_009575 | Functional Image Viewer | 2026-02-14 02:01:51 | 0 | ||||||
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NCIGT Fast Imaging Library Resource Report Resource Website |
NCIGT Fast Imaging Library (RRID:SCR_009609) | Fast Imaging Library | data processing software, software toolkit, software application, software resource, image reconstruction software, image analysis software | This software provides algorithms for the reconstruction of raw MR data. In particular, it supports the reconstruction of accelerated data acquisitions where k-space is subsampled and the Fourier domain encoding is complemented by temporal encoding, spatial encoding, or and/or a constrained reconstruction. This library of functions provides a number of reconstruction algorithms that accurately employ advanced MR imaging methods including: UNFOLD; parallel imaging methods such as SENSE and GRAPPA; Homodyne processing of partial-Fourier data, and gradient field inhomogeneity correction (gradwarp); EPI Nyquist Ghost correction and ramp-sampling gridding. The target audience is research groups who may be interested in exploring or employing advanced MR reconstruction techniques, but don't have the necessary expertise in-house. Inquires may be directed to: ncigt-imaging-toolkit -at- bwh.harvard.edu | algorithm, reusable library, application, c, console (text based), image reconstruction, linux, macos, microsoft, magnetic resonance, posix/unix-like, windows | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | NC-ICT Fast Imaging Library Contribution and Software License, Http://www.nitrc.org/include/glossary.php#569 | nlx_155822 | http://www.nitrc.org/projects/igt_fil | SCR_009609 | NC-IGT Fast Imaging Library, National Center for Image-Guided Therapy Fast Imaging Library | 2026-02-14 02:01:52 | 0 | ||||||
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MazeSuite Resource Report Resource Website 10+ mentions |
MazeSuite (RRID:SCR_009606) | MazeSuite | data visualization software, data processing software, software toolkit, software application, software resource | A complete set of tools that enables researchers to perform spatial and navigational behavior experiments within interactive, easy to create, and extendable (e.g., multiple rooms) 3D virtual environments. MazeSuite can be used to design/edit adapted 3D environments where subjects? behavioral performance can be tracked. Maze Suite consists of three main applications; an editing program to create and alter maps (MazeMaker), a visualization/rendering module (MazeWalker), and finally an analysis/mapping tool (MazeAnalyzer). Additionally, MazeSuite has the capabilities of sending signal pulses to physiological recording devices using standard computer ports. MazeSuite, with all 3 applications, is a unique and complete toolset for researchers who want to easily and rapidly deploy interactive 3D environments. Requirements Maze Suite is designed for Windows 7, Windows Vista and Windows XP. 3D rendering quality depends on available graphics card hardware; OpenGL 2.1 or above compliant is recommended. For Windows XP systems, .NET Framework Version 2.0 or above is required and can be downloaded from Microsoft's website. | eeg, meg, electrocorticography, optical imaging, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Drexel University; Pennsylvania; USA |
PMID:18411560 | Account required, Non-commercial, Software License Agreement, Http://mazesuite.com/forum/ucp.php?mode=terms&sid=7373a682447f060f67ec8693b7e470f7 | nlx_155807 | http://www.nitrc.org/projects/mazesuite | SCR_009606 | Maze Suite | 2026-02-14 02:01:52 | 11 | |||||
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Mango Resource Report Resource Website 100+ mentions |
Mango (RRID:SCR_009603) | Mango | data visualization software, data processing software, software application, image processing software, software resource, image analysis software | A viewer for medical research images that provides analysis tools and a user interface to navigate image volumes. There are three versions of Mango, each geared for a different platform: * Mango ? Desktop ? Mac OS X, Windows, and Linux * webMango ? Browser ? Safari, Firefox, Chrome, and Internet Explorer * iMango ? Mobile ? Apple iPad Key Features: * Built-in support for DICOM, NIFTI, Analyze, and NEMA-DES formats * Customizable: Create plugins, custom filters, color tables, file formats, and atlases * ROI Editing: Threshold and component-based tools for painting and tracing ROIs * Surface Rendering: Interactive surface models supporting cut planes and overlays * Image Registration: Semi-automatic image coregistration and manual transform editing * Image Stacking: Threshold and transparency-based image overlay stacking * Analysis: Histogram, cross-section, time-series analysis, image and ROI statistics * Processing: Kernel and rank filtering, arithmetic/logic image and ROI calculators | analyze, atlas application, console (text based), dicom, gifti, java, linux, macos, microsoft, magnetic resonance, nifti, os independent, platform, posix/unix-like, quantification, region of interest, registration, rendering, segmentation, spatial transformation, statistical operation, sunos/solaris, surface analysis, temporal transformation, visualization, volumetric analysis, web environment, win32 (ms windows), windows, windows vista, windows xp |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA |
NIBIB P01-EB01955; NIBIB R01-EB015314-01a1; NIMH R01-MH074457 |
Free | nlx_155804 | http://www.nitrc.org/projects/mango | SCR_009603 | Multi-image Analysis GUI | 2026-02-14 02:01:41 | 461 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
