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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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TempEst Resource Report Resource Website 100+ mentions |
TempEst (RRID:SCR_017304) | software toolkit, software resource, software application, data analysis software, data processing software | Software tool for investigating temporal signal and clocklikeness of molecular phylogenies. Used for visualization and analysis of temporally sampled sequence data to assess whether there is sufficient temporal signal in data to proceed with phylogenetic molecular clock analysis, and to identify sequences whose genetic divergence and sampling date are incongruent. Not available for downloading as of August 8, 2019. | temporal, signal, clocklikeness, molecular, phylogeny, visualization, analysis, temporally, sampled, sequenced, data, identify, genetic, incongruent | is related to: BEAST | EU Seventh Framework Programme ; ERC Grant |
DOI:doi.org/10.1093/ve/vew007 | Restricted | http://tree.bio.ed.ac.uk/software/tempest/ | SCR_017304 | Path-O-Gen, tempest | 2026-02-12 09:46:48 | 152 | ||||||
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phyloscanner Resource Report Resource Website 1+ mentions |
phyloscanner (RRID:SCR_017400) | software resource, software application, data analysis software, data processing software | Software tool for analysing pathogen genetic diversity and relationships between and within hosts at once, in windows along genome. Inferring transmission from within and between host pathogen genetic diversity. | Analysing, pathogen, genetic, diversity, relationship, host, genome | ERC Advanced Grant ; Bill & Melinda Gates Foundation ; Medical Research Council |
PMID:29186559 | Free, Available for download, Freely available | SCR_017400 | 2026-02-12 09:46:50 | 1 | |||||||||
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GeneATLAS Resource Report Resource Website 100+ mentions |
GeneATLAS (RRID:SCR_017577) | analysis service resource, service resource, production service resource, database, atlas, data analysis service, data or information resource | Database of associations between traits and variants using UK Biobank cohort. Searchable atlas of genetic associations. Assists researchers to query UK Biobank. Provides unbiased view of phenotype and genotype associations across of traits. | Association, trait, variant, UK Biobank, cohort, atlas, genetic, phenotype, genotype, FASEB list |
is listed by: OMICtools has parent organization: University of Edinburgh; Scotland; United Kingdom |
Free, Available for download, Freely available | SCR_017577 | Gene ATLAS, Gene Atlas | 2026-02-12 09:46:54 | 132 | |||||||||
|
European Variation Archive (EVA) Resource Report Resource Website 50+ mentions |
European Variation Archive (EVA) (RRID:SCR_017425) | EVA | data repository, service resource, storage service resource, database, data or information resource | Open access database of all types of genetic variation data from all species. Users can download data from any study, or submit their own data to archive. You can also query all variants by study, gene, chromosomal location or dbSNP identifier using our Variant Browser. | Collection, genetic, variation, data, chromosomal, location, dbSNP, bio.tools |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: bio.tools is listed by: Debian |
Free, Freely available | biotools:eva | https://bio.tools/eva | SCR_017425 | EVA, European Variation Archive | 2026-02-12 09:47:08 | 89 | ||||||
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GADMA Resource Report Resource Website 1+ mentions |
GADMA (RRID:SCR_017680) | GADMA | software resource, software application, data analysis software, data processing software | Software tool to implement methods for automatic inferring joint demographic history of multiple populations from genetic data. Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data. | Inferring, demographic, history, population, genetic, data, allele, frequency, spectrum, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
DOI:10.1101/407734 | Free, Available for download, Freely available | biotools:GADMA | https://bio.tools/GADMA | SCR_017680 | Genetic Algorithm for Demographic Model Analysis | 2026-02-12 09:46:55 | 3 | |||||
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Office of Research on Womens Health: Reseach Resource Report Resource Website |
Office of Research on Womens Health: Reseach (RRID:SCR_001822) | data or information resource, portal, organization portal | The mission of the Office of Research on Women's Health (ORWH) is to stimulate and encourage meritorious research on women's health, including the role of sex and gender in health and disease. The priorities signify approaches and areas for which there is a need to stimulate and encourage research on women's health, or sex/gender factors, and the advancement of women in biomedical research careers. These research priorities are not an exclusive list of research areas important to women's health; therefore other innovative or significant research areas should also be considered. The following four overarching themes are important for addressing research on women's health: Lifespan, Sex/Gender Determinants, Health Disparities/Differences and Diversity, ad Interdisciplinary Research. Special Areas of Emphasis - Prevention/Treatment: from basic biological factors, including identifying and validating biomarkers, to risk and its applications to disease prevention, early detection, and treatment. - Sex and Genetics/Pharmacogenomics: genetic, molecular, and cellular basis for action of pharmacologic agents known to have different effects in females than in males. Research on effects of sex as a modifier of gene function and response is under-investigated. Sponsors: This research is funded by the NAtional Institutes of Health. | function, gender, gene, genetic, biological, biomarker, biomedical, cellular, determinant, disease, disparity, diversity, heath, molecular, pharmacogenomics, prevention, sex, treatment, woman | Free | nif-0000-10387 | http://orwh.od.nih.gov/research.html | SCR_001822 | ORWH Research | 2026-02-12 09:43:14 | 0 | ||||||||
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CDC Cell and DNA Repository Resource Report Resource Website |
CDC Cell and DNA Repository (RRID:SCR_004680) | material resource, cell repository, biomaterial supply resource | A repository which houses DNA samples prepared from reference cell lines and are available for use in molecular genetic testing. The CF samples contain mutations associated with unique populations, combinations of IVS8 poly-thymidine tract variants, and mutations not previously available. Three DNA samples with homozygous MTHFR-related mutations are available. Hemochromatosis-associated samples include a compound HFE heterozygote and other combinations of HFE alleles. DNA samples with triplet repeats at the intermediate-range are available for HD and Fragile X syndrome. Mutations were confirmed in all cell lines from which the DNA has been prepared by reference testing and multi-laboratory pilot testing. Control DNA samples negative for all mutations are also available. Laboratories are encouraged to contact Coriell Cell Repositories to inquire about obtaining samples or donating samples as possible candidates for transformation. | genetic, mutation, lymphoblastoid cell culture, cell line, dna, cystic fibrosis, mthfr, hfe-associated hereditary hemochromatosis, huntington's disease, fragile x syndrome, muenke syndrome, connexin 26-associated deafness, alpha-thalassemia, control |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Coriell Cell Repositories has parent organization: Centers for Disease Control and Prevention |
Cystic fibrosis, 5 10 methylenetetrahydrofolate reductase deficiency, HFE-associated hereditary hemochromatosis, Huntington's disease, Fragile X syndrome, Muenke syndrome, Connexin 26-associated deafness, Alpha-thalassemia | Centers for Disease Control and Prevention | Distributed only to qualified professional persons who are associated with recognized research/medical/educational/industrial organizations engaged in health-related research or health delivery | nlx_143863 | SCR_004680 | Centers for Disease Control and Prevention Cell and DNA Repository | 2026-02-12 09:43:53 | 0 | ||||||
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Simons Simplex Collection Resource Report Resource Website 1+ mentions |
Simons Simplex Collection (RRID:SCR_004644) | SSC | material resource, cell repository, biomaterial supply resource | Repository of genetic samples from approximately 3,000 families, each of which has one child affected with an Autism Spectrum Disorder (ASD) and parents unaffected with ASD. A central database characterizing all of the study subjects is available to any qualified researcher and biospecimens are freely available to SFARI grant holders, and to other researchers on a modest fee-for-use basis. Each genetic sample will have an associated collection of data that provides a precise characterization of the individual (phenotype). Rigorous phenotyping will maximize the value of the resource for a wide variety of future research projects into the causes and mechanisms of autism. The Simons Simplex Collection is operated by SFARI in collaboration with twelve university-affiliated research clinics. | phenotype, genetic, cell line, fibroblast, dna, plasma |
is listed by: One Mind Biospecimen Bank Listing has parent organization: SFARI - Simons Foundation Autism Research Initiative |
Autism, Autism Spectrum Disorder, Unaffected parent | Public: Central database is available to any qualified researcher and biospecimens are freely available to SFARI grant holders, And to other researchers on a modest fee-for-use basis. | nlx_64171 | https://sfari.org/simons-simplex-collection | SCR_004644 | 2026-02-12 09:43:55 | 2 | ||||||
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California National Primate Research Center Resource Report Resource Website 10+ mentions |
California National Primate Research Center (RRID:SCR_006426) | CNPRC | data or information resource, portal, organization portal | Center for investigators studying human health and disease, offering the opportunity to assess the causes of disease, and new treatment methods in nonhuman primate models that closely recapitulate humans. Its mission is to provide interdisciplinary programs in biomedical research on significant human health-related problems in which nonhuman primates are the models of choice. | NPRC, NPRC Consortium, ORIP, drug, genetic, animal, biology, cause, cell, cynamolous, developmental, disease, health, human, immunology, model, nonhuman primate, physiology, primate, procedure, psychology, reproductive, surgery, surgical, therapy, titi, treatment, veterinarian, virology |
is listed by: Biositemaps is listed by: National Primate Research Center Consortium has parent organization: University of California at Davis; California; USA is parent organization of: California National Primate Research Center Analytical and Resource Core |
NCRR P51 RR000169; NIH Office of the Director P51 OD011107; NIH Office of the Director U42 OD010990 |
Free, Freely available, | nif-0000-24356 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | http://www.cnprc.ucdavis.edu | SCR_006426 | 2026-02-12 09:44:24 | 21 | |||||
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University of North Carolina Systems Genetics Core Facility Resource Report Resource Website 10+ mentions |
University of North Carolina Systems Genetics Core Facility (RRID:SCR_016401) | service resource, access service resource, core facility | Core focused on systems genetics approach to understanding diseases, development, aging, and fertility in mouse. Projects range from development of new community resources, such as Collaborative Cross, to development of tools and assays for measuring genetic diversity and discerning genomic structure. Collaborative Cross is reference population for mapping multigenic traits that would be free of population structure and it is new panel of recombinant inbred lines generated by randomizing genetic diversity of existing inbred mouse resources. | system, genetic, core, mouse, structure, disease, development, aging, fertility | has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA | Restricted | SCR_017240 | http://www.findmice.org/repository | SCR_016401 | University of North Carolina, Chapel Hill - Systems Genetics Core, UNC Systems Genetics | 2026-02-12 09:46:30 | 33 | |||||||
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Northwestern University Behavioral Phenotyping Core Facility Resource Report Resource Website |
Northwestern University Behavioral Phenotyping Core Facility (RRID:SCR_017765) | BPC | service resource, access service resource, core facility | Facility dedicated to help to determine behavioral effects of genetic manipulations, potential pharmaceuticals, aging, and other manipulations upon normal behavior, and learning and memory capacities of rodents used as model systems. Provides mouse and rat stereotaxic surgery, helps design behavioral studies. | Behavioral, effect, genetic, manipulation, pharmaceutical, aging, rodent, model, mouce, surgery, phenotypin, service, core | Restricted | ABRF_303 | SCR_017765 | Behavioral Phenotyping Core | 2026-02-12 09:46:56 | 0 | ||||||||
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GS-EM Resource Report Resource Website |
GS-EM (RRID:SCR_003992) | GS-EM | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154366 | SCR_003992 | GenoSpectrum Expectation-Maximuzation | 2026-02-12 09:43:41 | 0 | ||||||||
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Estonian Genome Center Resource Report Resource Website 1+ mentions |
Estonian Genome Center (RRID:SCR_004467) | EGCUT, EGC | material resource, biomaterial supply resource |
The Estonian Biobank is the population-based biobank of the EGCUT. The project is conducted in accordance with the Estonian Genes Research Act and all participants have signed a broad informed consent form (www.biobank.ee |
biomedicine, population-based studies, population-based study, biobanking, genotyping, sequencing, data analysis, wbc, gene, environmental factor, disease, genomics, epidemiology, clinical data, dna, white blood cell, plasma, blood, lifestyle, demographic, genetic |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Tartu; Tartu; Estonia |
General population | PMID:24518929 PMID:27256120 |
Public: The anonymous data (and biological materials) of the gene donors are available for research projects. Before an application can be accepted for review, The research project has to obtain an approval from the Ethics Review Committee on Human Research of the University of Tartu. The applicant will be asked to submit the results of the research project that were obtained using the data of the gene donors, To the EGCUT by the time specified in the contract. These results will complement the EGCUT database. | nlx_45748 | http://www.geenivaramu.ee/ | http://www.geenivaramu.ee/index.php?lang=eng | SCR_004467 | Estonian Genome Center University of Tartu, Estonian Biobank | 2026-02-12 09:43:49 | 8 | |||
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TDTPOWER Resource Report Resource Website |
TDTPOWER (RRID:SCR_005021) | TDTPOWER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application that calculates the sample size required for obtaining a prescribed power against a specified alternative for TDT. (entry from Genetic Analysis Software) | gene, genetic, genomic, sas macro | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154678 | SCR_005021 | 2026-02-12 09:44:04 | 0 | ||||||||
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NINDS Repository Resource Report Resource Website 1+ mentions |
NINDS Repository (RRID:SCR_004520) | material resource, biomaterial supply resource | Open resource of biological samples (DNA, cell lines, and other biospecimens) and corresponding phenotypic data to promote neurological research. Samples from more than 34,000 unique individuals with cerebrovascular disease, dystonia, epilepsy, Huntington's Disease, motor neuron disease, Parkinsonism, and Tourette Syndrome, as well as controls (population control and unaffected relatives) have been collected. The mission of the NINDS Repository is to provide 1) genetics support for scientists investigating pathogenesis in the central and peripheral nervous systems through submissions and distribution; 2) information support for patients, families, and advocates concerned with the living-side of neurological disease and stroke. | nervous system disorder, neurogenetics, genetic, clinical data, cerebrovascular disease, epilepsy, motor neuron disease, parkinson's disease, parkinsonism, tourette's disorder, normal control, stroke, amyotrophic lateral sclerosis, huntington's disease, dystonia, dementia, neurologically normal, blood, dna, biomarker, plasma, urine, cell line, induced pluripotent stem cell, fibroblast, stem cell, frozen, lymphoblast, biospecimen banking, biospecimen processing, biospecimen distribution, biospecimen, genetics, phenotype, neurological disease |
is listed by: One Mind Biospecimen Bank Listing is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: PD-DOC is related to: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR) has parent organization: Coriell Cell Repositories |
Cerebrovascular disease, Epilepsy, Motor neuron disease, Parkinson's disease, Tourette's Disorder, Normal control, Stroke, Amyotrophic Lateral Sclerosis, Huntington's disease, Dystonia, Dementia, Neurologically normal, Neurological disorder | NINDS ; NIH Blueprint for Neuroscience Research |
Public | nlx_143800 | SCR_004520 | NINDS Human Genetics DNA Cell Line Repository, NINDS Human Genetics DNA and Cell Line Repository, The NINDS Repository, The NINDS Human Genetics Resource Center, The NINDS Human Genetics DNA and Cell Line Repository | 2026-02-12 09:43:53 | 3 | ||||||
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KORA-gen Resource Report Resource Website 1+ mentions |
KORA-gen (RRID:SCR_004510) | KORA-gen | material resource, biomaterial supply resource | KORA-gen is infrastructure to provide phenotypes, genotypes and biosamples for collaborative genetic epidemiological research. From all four surveys that have been conducted so far, the following biological material is on hand: genomic DNA, blood serum, blood plasma and EBV immortalized cell lines (form KORA S4 only). These have been extracted from blood samples and are stored in nitrogen tanks and -80 degrees C refrigerators. Genomic DNA from more than 18.000 adult subjects from Augsburg and the surrounding counties is available at present. So far, EBV immortalized cell lines from 1.600 participants are cultivated. To meet the manifold demands of researchers with genetic and molecular questions KORA-gen fulfills the following prerequisites for successful genetic-epidemiological research: * representative samples from the general population, * well characterized disease phenotypes and intermediate phenotypes, * information on environmental factors, * availability of genomic DNA, serum, plasma and urine, as well as EBV immortalized cell lines. In total, four population based health surveys have been conducted between 1984 and 2000 with 18000 participants in the age range of 25 to 74 years, and a biological specimen bank was established in order to enable scientists to perform epidemiologic research with respect to molecular and genetic questions. The KORA study center conducts regular follow-up investigations and has collected a wealth of information on sociodemography, general medical history, environmental factors, smoking, nutrition, alcohol consumption, and various laboratory parameters. This unique resource will be increased further by follow-up studies of the cohort. The assessment of statistical questions covers the definition of the study design and the calculation of statistical power. Furthermore, we offer assistance in data analysis. Kora-gen can be used by external partners. Interested parties can inform themselves interactively via internet about the available data and rules of access. The genotypic data base is a common resource to all partners. | gene, genetic, epidemiology, dna, serum, plasma, urine, cell line, epstein-barr virus immortalized cell line, blood, frozen, nitrogen, disease phenotype, adult human, survey, population study, genotype, phenotype |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Helmholtz Center Munich Institute of Epidemiology |
General population, Well characterized disease phenotype, Well characterized disease intermediate phenotype | Collaborators: Kora-gen can be used by external partners. Interested parties can inform themselves interactively via internet about the available data and rules of access. The genotypic data base is a common resource to all partners. | nlx_49266 | SCR_004510 | Cooperative Health Research in the Region of Augsburg-gen | 2026-02-12 09:43:50 | 8 | ||||||
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POPDIST Resource Report Resource Website |
POPDIST (RRID:SCR_004904) | POPDIST | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that calculates a number of different genetic identities, phylogeny reconstructing measures, and distance reconstructing measures (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, (aix/irix/decalpha), linux, macos, ms-dos, ms-windows, (95) | is listed by: Genetic Analysis Software | PMID:21564908 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154542 | SCR_004904 | 2026-02-12 09:43:59 | 0 | |||||||
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LDSUPPORT Resource Report Resource Website |
LDSUPPORT (RRID:SCR_007036) | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, linux | is listed by: Genetic Analysis Software | nlx_154427 | SCR_007036 | 2026-02-12 09:44:21 | 0 | ||||||||||
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Zebrafish Gene Collection Resource Report Resource Website 1+ mentions |
Zebrafish Gene Collection (RRID:SCR_007054) | ZGC | material resource, biomaterial supply resource | Part of zebrafish genome project. ZGC project to produce cDNA libraries, clones and sequences to provide complete set of full-length (open reading frame) sequences and cDNA clones of expressed genes for zebrafish. All ZGC sequences are deposited in GenBank and clones can be purchased from distributors of IMAGE consortium. With conclusion of ZGC project in September 2008, GenBank records of ZGC sequences will be frozen, without further updates. Since definition of what constitutes full-length coding region for some of genes and transcripts for which we have ZGC clones will likely change in future, users planning to order ZGC clones will need to monitor for these changes. Users can make use of genome browsers and gene-specific databases, such as UCSC Genome browser, NCBI's Map Viewer, and Entrez Gene, to view relevant regions of genome (browsers) or gene-related information (Entrez Gene). | cdna library, clone, sequence, full-length open reading frame, cdna clone, frozen, fish, gene, genetic, genome, genomic |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) is related to: Mammalian Gene Collection is related to: GenBank is related to: ATCC has parent organization: National Cancer Institute |
NIH Blueprint for Neuroscience Research | Free, Freely available | nif-0000-00567 | https://genecollections.nci.nih.gov/ZGC/ | SCR_007054 | Zebrafish Gene Collection | 2026-02-12 09:44:22 | 1 | |||||
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LINKAGE - CEPH Resource Report Resource Website |
LINKAGE - CEPH (RRID:SCR_007048) | LINKAGE - CEPH | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, ms-dos, os2, unix, vms | is listed by: Genetic Analysis Software | nlx_154429 | SCR_007048 | three-generation pedigrees, FASTLINK | 2026-02-12 09:44:27 | 0 |
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