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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SegAN Resource Report Resource Website 1+ mentions |
SegAN (RRID:SCR_016215) | data processing software, software application, software resource, image analysis software | Image analysis software for medical image segmentation. The software is fueled by an end-to-end adversarial neural network that generates segmentation label maps. | neural, network, segmentation, pixel, spatial, image, medical, analysis, labelling, loss function, segmentor | NIH ; NLM ; LHNCBC HHSN276201500692P |
Free, Available for download | SCR_016215 | Semantic Segmentation with Adversarial Learning (SegAN), Semantic Segmentation with Adversarial Learning, SegAN: Semantic Segmentation with Adversarial Learning | 2026-02-16 09:48:59 | 4 | |||||||||
|
The NINDS Human Cell and Data Repository (NHCDR) Resource Report Resource Website 10+ mentions |
The NINDS Human Cell and Data Repository (NHCDR) (RRID:SCR_016319) | NHCDR | tissue bank, material resource, biomaterial supply resource | Cell sources currently include fibroblasts and/or induced pluripotent stem cells for Alzheimer's Disease, Amyotrophic Lateral Sclerosis (ALS), Ataxia-telangiectasia, Frontotemporal Lobar Degeneration (FTD), Huntington's Disease, Parkinson's Disease, and healthy controls. Cell sources, including isogenic cell lines for current and new diseases covered by the NINDS will be added over the next several years. | Stem, cell, fibroblast, plutipotent, isogenic |
is used by: NIH Heal Project is recommended by: National Library of Medicine is listed by: re3data.org works with: Cellosaurus |
Alzheimer's Disease, Amyotrophic Lateral Sclerosis (ALS), Ataxia-telangiectasia, Frontotemporal Lobar Degeneration (FTD), Huntington's Disease, Parkinson's Disease | NLM ; NINDS |
Restricted | https://nindsgenetics.org/ | SCR_016319 | NINDS Human Cell and Data Repository (NHCDR) | 2026-02-16 09:49:00 | 16 | |||||
|
Midas Platform Resource Report Resource Website 10+ mentions |
Midas Platform (RRID:SCR_002186) | Midas | software application, software resource, data management software, software toolkit | Open-source toolkit that enables the rapid creation of tailored, web-enabled data storage and provides a cohesive system for data management, visualization, and processing. At its core, Midas Platform is implemented as a PHP modular framework with a backend database (PostGreSQL, MySQL and non-relational databases). While the Midas Platform system can be installed and deployed without any customization, the framework has been designed with customization in mind. As building one system to fit all is not optimal, the framework has been extended to support plugins and layouts. Through integration with a range of other open-source toolkits, applications, or internal proprietary workflows, Midas Platform offers a solid foundation to meet the needs of data-centric computing. Midas Platform provides a variety of data access methods, including web, file system and DICOM server interfaces, and facilitates extending the methods in which data is stored to other relational and non-relational databases. | data storage, data analysis, visualization, multimedia, digital archiving, processing | has parent organization: Kitware | NLM ; NIH ; NCI |
PMID:18560078 | Apache License, v2, Simplified BSD License, BSD License | nlx_154696 | SCR_002186 | Midas Platform - The Multimedia Digital Archiving System | 2026-02-16 09:45:41 | 42 | |||||
|
MEDI Resource Report Resource Website 100+ mentions |
MEDI (RRID:SCR_015668) | software application, software resource, standalone software | Medication indication software for primary and secondary uses of electronic medical record (EMR) data. MEDI was created based on multiple commonly used medication resources (RxNorm, MedlinePlus, SIDER 2, and Wikipedia ) and by leveraging both ontology and natural language processing (NLP) techniques. | ensemble medication indication, electronic medical record, emr | NLM 1 R01 LM 010685 | PMID:23576672 | Free, Available for download | SCR_015668 | MEDI (MEDication Indication), MEDication Indication, MEDI--an Ensemble MEDication Indication Resource | 2026-02-16 09:48:51 | 215 | ||||||||
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MetaMap Resource Report Resource Website 100+ mentions |
MetaMap (RRID:SCR_015031) | software application, software resource, text-mining software | Program to map biomedical text to the UMLS Metathesaurus and to discover Metathesaurus concepts referred to in text based on symbolic, natural-language processing and computational-linguistic techniques. | text mining, biomedical text | NLM | Free, Account required | SCR_015031 | MetaMap 2016, MetaMap 2016v2 | 2026-02-16 09:48:46 | 337 | |||||||||
|
Gene Atlas Resource Report Resource Website 10+ mentions |
Gene Atlas (RRID:SCR_008089) | Geneatlas | data or information resource, database, atlas | This website allows visitors to search for genes of interest based on their spatial expression patterns in the Postnatal Day 7 mouse brain. Geneatlas provides two searching tools: A graphical interface for customized spatial queries; A textual interface for querying annotated structures. Geneatlas is the product of a collaboration between researchers at Baylor College of Medicine, Rice University, and University of Houston. | gene, brain, mouse, protein, spatial expression, molecular neuroanatomy resource, FASEB list |
has parent organization: University of Houston; Texas; USA has parent organization: Baylor University; Texas; USA |
Burroughs Wellcome Fund ; NLM 5T15LM07093; NCRR P41RR02250 |
nif-0000-10987 | SCR_008089 | 2026-02-16 09:47:06 | 47 | ||||||||
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microbeMASST Resource Report Resource Website 1+ mentions |
microbeMASST (RRID:SCR_024713) | data access protocol, software resource, web service | Web taxonomically informed mass spectrometry search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging database of over 60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. | Identification of microbial derived metabolites, microbial metabolomics data, microbial metabolite annotation, taxonomy, mass spectrometry search tool, searching tool, bacteria, fungi, metabolomics, microbiome, search known and unknown MS/MS spectra, | is related to: GNPS MASST | NIDDK U24DK133658; NIA U19AG063744; NIGMS 1DP2GM137413; Korean Government ; Austrian Science Fund ; German Research Foundation ; Sao Paulo Research Foundation ; Mexican National Council of Science and Technology ; NIGMS R01GM107550; NSF ; Research Council of Norway ; NIAID R01AI167860; NIDDK T32DK007202; NIGMS 1R01GM132649; NIGMS R35GM142938; NIDDK U01DK119702; NIH Office of the Director S10 OD021750; NLM 1R01LM013115 |
PMID:37577622 | Free, Freely available, | SCR_024713 | 2026-02-16 09:50:46 | 6 | ||||||||
|
tTFtarget Resource Report Resource Website 1+ mentions |
tTFtarget (RRID:SCR_025631) | database, data or information resource | Transcription factor target database. Platform consolidating both computationally predicted and experimentally validated binding sites between transfer RNA-derived fragments and target genes or transcripts across multiple organisms. | Transcription factor target, validated binding sites, transfer RNA-derived fragments, target genes, multiple organisms, | NLM R01LM014087; NSF |
DOI:10.1093/nar/gkad815 | Free, Freely available | SCR_025631 | tRFtarget 2.0, tRFtarget 1.0 | 2026-02-16 09:51:00 | 2 | ||||||||
|
CDEMapper Resource Report Resource Website |
CDEMapper (RRID:SCR_027602) | software application, software resource, source code | Software Common Data Elements (CDEs) mapping tool to bridge the gap between local data elements and National Institutes of Health (NIH) CDEs. Elasticsearch and Large Language Model (LLM)-powered mapping tool designed for biomedical and clinical researchers to efficiently map study variables to the NIH Common Data Elements (CDEs). It integrates essential and advanced services into a user-centered mapping workflow, allowing users to choose different mapping strategies based on their project's needs.Used for enhancing National Institutes of Health common data element use with large language models. | mapping, map study variables, NIH Common Data Elements, map study variables to NIH Common Data Elements, | NLM U24LM013755 | PMID:40332956 | Free, Available for download, Freely available | https://github.com/BIDS-Xu-Lab/CDE-Mapping-Tool | SCR_027602 | CDEMapper 2.0 | 2026-02-16 09:51:25 | 0 |
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