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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of Alabama at Birmingham Diabetes Research Center Resource Report Resource Website |
University of Alabama at Birmingham Diabetes Research Center (RRID:SCR_015107) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Research center which operates in collaboration with the University of Alabama Birmingham Comprehensive Diabetes Center to promote excellence in diabetes research and patient care. The DRC supports the areas of animal physiology, human biology and intervention and translational research. It focuses on developing new methods to treat, prevent, and ultimately cure diabetes and its complications. | diabetes, animal physiology, human biology |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers has parent organization: University of Alabama at Birmingham; Alabama; USA is parent organization of: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core is parent organization of: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK DK079626 | Available to the research community, Acknowledgement requested | SCR_015107 | 2026-02-15 09:21:06 | 0 | ||||||||
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Michigan Diabetes Research Center Resource Report Resource Website 1+ mentions |
Michigan Diabetes Research Center (RRID:SCR_015112) | MDRC | access service resource, core facility, service resource | Multidisciplinary unit of the University of Michigan funded by the National Institute of Diabetes and Digestive and Kidney Diseases/National Institute of Health. Promotes new discoveries and enhance scientific progress through the support of basic and clinical research related to diabetes, its complications, and related disorders. Creates environment that supports innovative research; attracts and retains early stage investigators and investigators new to diabetes research; provides core services that leverage funding and unique expertise; fosters interdisciplinary collaborations; raises awareness and interest in fundamental and clinical diabetes research at their institutions, as well as locally, regionally, and nationally. | clinical diabetes research, multidisciplinary research, endocrine and metabolic disorders, |
is listed by: NIDDK Information Network (dkNET) has organization facet: Michigan Diabetes Research Center Administrative Core Facility has organization facet: Michigan Diabetes Research Center Clinical Core Facility has organization facet: Michigan Diabetes Research Center Microscopy and Image Analysis Core Facility has organization facet: Michigan Diabetes Research Center Molecular Genetics Core Facility has organization facet: Michigan Diabetes Research Center Animal Studies Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK020572 | Restricted | http://diabetesresearch.med.umich.edu | SCR_015112 | Michigan Diabetes Research Center (MDRC) | 2026-02-15 09:21:18 | 4 | |||||
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USC Liver Transplant Program and Center for Liver Disease Resource Report Resource Website |
USC Liver Transplant Program and Center for Liver Disease (RRID:SCR_015237) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Center whose goal is the facilitation and fostering of interdisciplinary collaborative research in the field of pathobiology of diseases of the liver and digestive tract and the development of new treatments for these diseases. | liver disease, digestive disease |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Southern California Keck School of Medicine; California; USA is parent organization of: USC Liver Transplant Program and Center for Liver Disease Cell and Tissue Imaging Core is parent organization of: USC Liver Transplant Program and Center for Liver Disease Cell Separation and Culture Core is parent organization of: USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core is parent organization of: USC Liver Transplant Program and Center for Liver Disease Liver Histology Core has organization facet: USC Liver Transplant Program and Center for Liver Disease Cell Separation and Culture Core has organization facet: USC Liver Transplant Program and Center for Liver Disease Cell and Tissue Imaging Core has organization facet: USC Liver Transplant Program and Center for Liver Disease Liver Histology Core has organization facet: USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core is organization facet of: Digestive Disease Centers |
liver disease | NIDDK P30DK048522 | Available to the research community | SCR_015237 | 2026-02-15 09:20:51 | 0 | ||||||||
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Boston Area Diabetes Endocrinology Research Center Resource Report Resource Website |
Boston Area Diabetes Endocrinology Research Center (RRID:SCR_015072) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Consortium of laboratory-based and clinical investigators who research etiology, pathogenesis, treatment and cure of type 1 and type 2 diabetes, and their associated microvascular and atherosclerotic complications. | Endicronology, insulin, diabetes |
is listed by: NIDDK Information Network (dkNET) is parent organization of: Boston Area Diabetes Endocrinology Research Center Molecular Biology has organization facet: Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility has organization facet: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility has organization facet: Boston Area Diabetes Endocrinology Research Center Molecular Biology has organization facet: Boston Area Diabetes Endocrinology Research Center Pancreatic Islet has organization facet: Boston Area Diabetes Endocrinology Research Center Transgenic is organization facet of: Diabetes Research Centers |
Type 1 diabetes, Type 2 diabetes, Diabetes | NIDDK P30DK057521 | Available to the research community | SCR_015072 | 2026-02-15 09:20:48 | 0 | ||||||||
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Marion Bessin Liver Research Center Resource Report Resource Website |
Marion Bessin Liver Research Center (RRID:SCR_015190) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Center that conducts scientific investigation to understand fundamental mechanisms of normal liver function, alterations in these functions resulting from metabolic disorders, genetic diseases, acute and chronic liver injury, hepatitis virus infection, hepatic fibrosis and liver cancer, and ways to overcome these abnormalities through methods of genetic engineering, gene therapy and liver cell transplantation. | liver research, genetic diseases, metabolic diseases research |
is listed by: NIDDK Information Network (dkNET) has parent organization: Albert Einstein College of Medicine; New York; USA is parent organization of: Marion Bessin Liver Research Center Genetic Engineering and Gene Therapy is parent organization of: Molecular Biology and Next Generation Technology is parent organization of: Marion Bessin Liver Research Center Imaging and Cell Structure is parent organization of: Marion Bessin Liver Research Center Animal Models Stem Cells and Cell Therapy has organization facet: Marion Bessin Liver Research Center Animal Models Stem Cells and Cell Therapy has organization facet: Marion Bessin Liver Research Center Imaging and Cell Structure has organization facet: Marion Bessin Liver Research Center Genetic Engineering and Gene Therapy has organization facet: Molecular Biology and Next Generation Technology has organization facet: Marion Bessin Liver Research Center Administrative and Supporting Services is organization facet of: Digestive Disease Centers |
liver disease | NIDDK P30DK041296 | Available to the research community | SCR_015190 | 2026-02-15 09:21:11 | 0 | ||||||||
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Einstein-Mount Sinai Diabetes Research Center Resource Report Resource Website |
Einstein-Mount Sinai Diabetes Research Center (RRID:SCR_015070) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Research center that facilitates the research of diabetes and related studies in obesity, metabolism and endocrinology | clinical diabetes center, obesity research, metabolism research, diabetes research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers has parent organization: Albert Einstein College of Medicine; New York; USA is parent organization of: Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core Facility is parent organization of: Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core Facility is parent organization of: Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility is parent organization of: Einstein-Mount Sinai Diabetes Research Center Biomarker Analytic Research Core Facility is parent organization of: Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Biomarker Analytic Research Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | New York Obesity Research Center ; Center for the Study of Diabetic Complications ; Montefiore Clinical Diabetes Center ; NIDDK P30DK020541 |
Available to the research community | SCR_015070 | 2026-02-15 09:21:05 | 0 | ||||||||
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Washington University Center for Diabetes Translation Research Resource Report Resource Website |
Washington University Center for Diabetes Translation Research (RRID:SCR_015204) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Research center for diabetes that offers regional and national resources to investigators for translation interventions into healthcare settings, communities, and populations at-risk. The CDTR supports studies investigating the root causes of diabetes and disparities as well as the prevention of obesity as a major contributing cause of Type 2 diabetes. | diabetes research, translational medicine, type two diabetes, type 2 diabetes, obesity |
is listed by: NIDDK Information Network (dkNET) has parent organization: Washington University in St. Louis; Missouri; USA is parent organization of: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core is parent organization of: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core is parent organization of: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core has organization facet: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core has organization facet: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core has organization facet: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core has organization facet: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core has organization facet: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core has organization facet: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core has organization facet: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core is organization facet of: Centers for Diabetes Translation Research |
Diabetes | NIDDK P30DK092950 | Available to the research community | SCR_015204 | 2026-02-15 09:21:21 | 0 | ||||||||
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Chicago Center for Diabetes Translation Research Resource Report Resource Website |
Chicago Center for Diabetes Translation Research (RRID:SCR_015179) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Center to improve the lives of people with diabetes and people at risk for diabetes through prevention, improved diabetes care, and community empowerment. | diabetes, translation, diabetes research, chicago |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Centers for Diabetes Translation Research has parent organization: University of Chicago; Illinois; USA is parent organization of: Chicago Center for Diabetes Translation Research Outcomes Improvement Core is parent organization of: Chicago Center for Diabetes Translation Research Quantitative Analysis Core is parent organization of: Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core has organization facet: Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core has organization facet: Chicago Center for Diabetes Translation Research Outcomes Improvement Core has organization facet: Chicago Center for Diabetes Translation Research Quantitative Analysis Core is organization facet of: Centers for Diabetes Translation Research |
Diabetes | NIDDK P30DK092949 | Available to the research community | SCR_015179 | 2026-02-15 09:21:08 | 0 | ||||||||
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New York Regional Center for Diabetes Translation Research Resource Report Resource Website |
New York Regional Center for Diabetes Translation Research (RRID:SCR_015174) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Center designed to increase collaboration and enhance communication among diabetes researchers from multiple institutions and diverse disciplines | diabetes, translation, new york, diabetes research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Centers for Diabetes Translation Research has parent organization: Albert Einstein College of Medicine; New York; USA is parent organization of: New York Regional Center for Diabetes Translation Research Latino Network for Diabetes Translational Research is parent organization of: New York Regional Center for Diabetes Translation Research Translational Intervention Methodology Core is parent organization of: New York Regional Center for Diabetes Translation Research Life Course Methodology Core is parent organization of: New York Regional Center for Diabetes Translation Research Population Health and Health Systems Core has organization facet: New York Regional Center for Diabetes Translation Research Translational Intervention Methodology Core has organization facet: New York Regional Center for Diabetes Translation Research Life Course Methodology Core has organization facet: New York Regional Center for Diabetes Translation Research Population Health and Health Systems Core has organization facet: New York Regional Center for Diabetes Translation Research Latino Network for Diabetes Translational Research is organization facet of: Centers for Diabetes Translation Research |
Diabetes | NIDDK DK111022 | Available to the research community | SCR_015174 | 2026-02-15 09:21:10 | 0 | ||||||||
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Yale Diabetes Research Center Resource Report Resource Website |
Yale Diabetes Research Center (RRID:SCR_015142) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | University-affiliated center that promotes research in diabetes and related metabolic and endocrine disorders at Yale University. | diabetes, metabolic, endocrine, research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers has parent organization: Yale University; Connecticut; USA is parent organization of: Yale Diabetes Research Center Diabetes Translational Core Facility is parent organization of: Yale Diabetes Research Center Cell Biology Core Facility is parent organization of: Yale Diabetes Research Center Administrative Core Facility is parent organization of: Yale Diabetes Research Center Molecular Core Facility is parent organization of: Yale Diabetes Research Center Clinical Metabolism Core Facility is parent organization of: Yale Diabetes Research Center Physiology Core Facility is parent organization of: Yale Diabetes Research Center Molecular Genetics Core has organization facet: Yale Diabetes Research Center Administrative Core Facility has organization facet: Yale Diabetes Research Center Cell Biology Core Facility has organization facet: Yale Diabetes Research Center Clinical Metabolism Core Facility has organization facet: Yale Diabetes Research Center Diabetes Translational Core Facility has organization facet: Yale Diabetes Research Center Molecular Core Facility has organization facet: Yale Diabetes Research Center Physiology Core Facility has organization facet: Yale Diabetes Research Center Molecular Genetics Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK045735 | Available to the research community | SCR_015142 | 2026-02-15 09:21:09 | 0 | ||||||||
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Vanderbilt Diabetes Research and Training Center Resource Report Resource Website |
Vanderbilt Diabetes Research and Training Center (RRID:SCR_015153) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | University-affiliated center that facilitates the discovery, application, and translation of scientific knowledge to improve the lives of people with diabetes. | diabetes research, training service |
is listed by: NIDDK Information Network (dkNET) has parent organization: Vanderbilt University; Tennessee; USA is parent organization of: Vanderbilt Diabetes Research and Training Center Transgenic Mouse and ES Cell Shared Resource is parent organization of: Vanderbilt Diabetes Research and Training Center Metabolic Physiology Shared Resource is parent organization of: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility is parent organization of: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core is parent organization of: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility is parent organization of: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility has organization facet: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility has organization facet: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility has organization facet: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core has organization facet: Vanderbilt Diabetes Research and Training Center Metabolic Physiology Shared Resource has organization facet: Vanderbilt Diabetes Research and Training Center Transgenic Mouse and ES Cell Shared Resource has organization facet: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK DK20593 | Available to the research community | SCR_015153 | 2026-02-15 09:20:49 | 0 | ||||||||
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imctools Resource Report Resource Website 10+ mentions Rating or validation data |
imctools (RRID:SCR_017132) | IMCtools | software application, data processing software, software resource | Software Python package that implements preprocessing pipeline for imaging mass cytometry data. Can convert IMC raw files to tiff files that are used as inputs into CellProfiller, Ilastik, Fiji etc. | preprocessing, pipeline, imaging, mass, cytometry, data, convert, IMC, raw, file, TIFF |
has parent organization: University of Zurich; Zurich; Switzerland is a plug in for: Fiji |
Swiss National Science Foundation ; SNSF Assistant Professorship grant ; PhosphonetPPM and MetastasiX SystemsX grant ; NIDDK UC4 DK108132; European Research Council ; Roche Postdoctoral Fellowship |
PMID:29605184 | Free, Available for download, Freely available | https://bodenmillergroup.github.io/imctools/build/html/index.html | SCR_017132 | imaging mass spectrometry tools | 2026-02-15 09:21:15 | 22 | |||||
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mgatk Resource Report Resource Website 1+ mentions |
mgatk (RRID:SCR_021159) | software application, data processing software, software toolkit, software resource | Software python-based command line interface for processing .bam files with mitochondrial reads and generating high-quality heteroplasmy estimation from sequencing data. This package places a special emphasis on mitochondrial genotypes generated from single-cell genomics data, primarily mtscATAC-seq, but is generally applicable across other assays. | processing .bam files, mitochondrial reads, heteroplasmy estimation, sequencing data, mitochondrial genotypes, mtscATAC-seq | NCI F31 CA232670; NCI R01 CA208756; NCI P01 CA206978; NCI U10 CA180861; NIDDK R01 DK103794; NHLBI R33 HL120791 |
DOI:10.1038/s41587-020-0645-6 | Free, Available for download, Freely available | SCR_021159 | mitochondrial genome analysis toolkit | 2026-02-15 09:21:58 | 2 | ||||||||
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Machine Learning Made Easy Resource Report Resource Website 1+ mentions |
Machine Learning Made Easy (RRID:SCR_024439) | MLme | software toolkit, software resource | Software toolkit for Machine Learning Driven Data Analysis. Simplifies machine learning for data exploration, visualization and analysis. | Machine Learning Driven Data Analysis, | Wings for Life Spinal Cord Research Foundation ; NIDDK R01 DK127673; Federal Ministry of Education and Research of Germany ; Swiss National Science Foundation |
PMID:37461685 | Free, Available for download, Freely available | SCR_024439 | 2026-02-15 09:23:29 | 1 | ||||||||
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Integrated Islet Distribution Program (IIDP) Resource Report Resource Website 100+ mentions Rating or validation data |
Integrated Islet Distribution Program (IIDP) (RRID:SCR_014387) | IIDP | organization portal, resource, data or information resource, portal | The goal of the Integrated Islet Distribution Program (IIDP) is to work with the leading islet isolation centers in the U.S. to distribute high quality human islets to the diabetes research community, in order to advance scientific discoveries and translational medicine. | program, islet, distribution, diabetes |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources |
Diabetes | NIDDK | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014387 | Integrated Islet Distribution Program | 2026-02-15 09:20:43 | 294 | ||||||
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Centers for Diabetes Translation Research Resource Report Resource Website 1+ mentions |
Centers for Diabetes Translation Research (RRID:SCR_015149) | organization portal, portal, data or information resource, topical portal, disease-related portal, resource | Centers that are part of an integrated program whose cores support and enhance diabetes type II translation research. The CDTRs aim to enhance the efficiency, productivity, effectiveness and multidisciplinary nature of diabetes translation research. | diabetes type ii, diabetes research, translation |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Vanderbilt Center for Diabetes Translation Research is affiliated with: New York Regional Center for Diabetes Translation Research is affiliated with: Chicago Center for Diabetes Translation Research is affiliated with: Georgia Center for Diabetes Translation Research is affiliated with: Michigan Center for Diabetes Translational Research is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Chicago Center for Diabetes Translation Research has organization facet: New York Regional Center for Diabetes Translation Research has organization facet: Georgia Center for Diabetes Translation Research has organization facet: Health Delivery Systems Center for Diabetes Translational Research has organization facet: Michigan Center for Diabetes Translational Research has organization facet: Vanderbilt Center for Diabetes Translation Research has organization facet: Washington University Center for Diabetes Translation Research |
Diabetes | NIDDK P30RFA-DK15-003 | Available to the research community | SCR_015149 | 2026-02-15 09:20:49 | 1 | ||||||||
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Cystic Fibrosis Center - University of California San Francisco Resource Report Resource Website |
Cystic Fibrosis Center - University of California San Francisco (RRID:SCR_015398) | portal, service resource, data or information resource, access service resource, topical portal, disease-related portal, resource | Research center that focuses on developing novel therapies for cystic fibrosis, enhancing research projects examining the mechanisms of the disease, and developing new small-molecule therapies that can be translated into the clinic. | cystic fibrosis therapy, cystic fibrosis mechanism, cystic fibrosis research, small molecule therapy |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of California at San Francisco; California; USA is organization facet of: Cystic Fibrosis Research and Translation Centers |
Cystic Fibrosis | NIDDK P30DK072517 | Available to the research community | SCR_015398 | 2026-02-15 09:21:15 | 0 | ||||||||
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SigCom LINCS Resource Report Resource Website 1+ mentions |
SigCom LINCS (RRID:SCR_022275) | web service, data access protocol, software resource | Web server that serves over million gene expression signatures processed, analyzed, and visualized from LINCS, GTEx, and GEO. Data and metadata search engine for gene expression signatures. | FAIR data, data and metadata search engine, gene expression signatures, gene expression signature processed, analyzed, and visualized, LINCS, GTEx, GEO, gene expression signatures, | NHLBI U54HL127624; NIDDK R01DK131525; NIH Office of the Director OT2OD030160 |
PMID:35524556 | Free, Freely available | https://github.com/MaayanLab/sigcom-lincs | SCR_022275 | SigCom Library of Integrated Network-based Cellular Signatures | 2026-02-15 09:22:50 | 7 | |||||||
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SpiecEasi Resource Report Resource Website 10+ mentions |
SpiecEasi (RRID:SCR_022712) | SpiecEasi | software application, data processing software, data analysis software, software resource | Software R package for microbiome network analysis. Used for inference of microbial ecological networks from amplicon sequencing datasets. Combines data transformations developed for compositional data analysis with graphical model inference framework that assumes underlying ecological association network is sparse. | microbiome network analysis, amplicon sequencing datasets, microbial ecological networks inference | NIAID AI007180; NIDDK DK103358; NIGMS GM63270; Simons Foundation |
PMID:25950956 | Free, Available for download, Freely available | SCR_022712 | SParse InversE Covariance Estimation for Ecological Association Inference | 2026-02-15 09:22:18 | 15 | |||||||
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PICRUSt2 Resource Report Resource Website 100+ mentions |
PICRUSt2 (RRID:SCR_022647) | software application, simulation software, software resource | Software for predicting functional abundances based only on marker gene sequences.Used for prediction of metagenome functions. Contains updated and larger database of gene families and reference genomes, provides interoperability with any operational taxonomic unit (OTU)-picking or denoising algorithm, and enables phenotype predictions. Allows addition of custom reference databases. | predicting functional abundances, marker gene sequences, metagenome functions prediction | is related to: PICRUSt | NSF IOS CAREER 1942647; NIDDK U54DK102557; NIDDK R24DK110499; NSERC ; GlaxoSmithKline |
PMID:32483366 | Free, Available for download, Freely available | https://github.com/picrust/picrust2 | SCR_022647 | Phylogenetic Investigation of Communities by Reconstruction of Unobserved States | 2026-02-15 09:22:59 | 368 |
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