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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Physico-Chemical Methods and Properties Resource Report Resource Website |
Physico-Chemical Methods and Properties (RRID:SCR_010407) | FIX | ontology, controlled vocabulary, data or information resource | Two ontologies: methods and properties (but not objects, which are subject of the chemical ontology). The methods are applied to study the properties. | obo, method, property, biophysical chemistry, physico-chemical |
is listed by: BioPortal is listed by: OBO has parent organization: CHEBI |
nlx_157552 | ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/fix.obo | SCR_010407 | 2026-02-11 10:58:12 | 0 | ||||||||
|
Syndromic Surveillance Ontology Resource Report Resource Website |
Syndromic Surveillance Ontology (RRID:SCR_010409) | SSO | ontology, controlled vocabulary, data or information resource | Ontology that encodes agreement among experts about how Emergency Department (ED) chief complaints are grouped into syndromes of public health importance (consensus definitions). | owl | is listed by: BioPortal | nlx_157600 | SCR_010409 | 2026-02-11 10:58:18 | 0 | |||||||||
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Orphanet Rare Disease Ontology Resource Report Resource Website |
Orphanet Rare Disease Ontology (RRID:SCR_010402) | ORDO | ontology, controlled vocabulary, data or information resource | Ontology to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It derived from the Orphanet database (http://www.orpha.net) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, SNOMED CT, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10). The ontology will be maintained by Orphanet and further populated with new data. Orphanet classifications can be browsed in the OLS view. The Orphanet Rare Disease Ontology is updated monthly and follows the OBO guidelines on deprecation of terms. It constitutes the official ontology of rare diseases produced and maintained by Orphanet (INSERM, US14). | owl |
is listed by: BioPortal has parent organization: Orphanet has parent organization: European Bioinformatics Institute |
Rare disease | nlx_157540 | SCR_010402 | 2026-02-11 10:58:18 | 0 | ||||||||
|
Parasite Experiment Ontology Resource Report Resource Website |
Parasite Experiment Ontology (RRID:SCR_010403) | PEO | ontology, controlled vocabulary, data or information resource | Ontology that models provenance metadata associated with experiment protocols used in parasite research. The PEO extends the upper-level Provenir ontology (http://knoesis.wright.edu/provenir/provenir.owl) to represent parasite domain-specific provenance terms. The PEO (v 1.0) includes Proteome, Microarray, Gene Knockout, and Strain Creation experiment terms along with other terms that are used in pathway. | owl | is listed by: BioPortal | nlx_157541 | SCR_010403 | 2026-02-11 10:58:11 | 0 | |||||||||
|
Pharmacogenomic Relationships Ontology Resource Report Resource Website |
Pharmacogenomic Relationships Ontology (RRID:SCR_010406) | PHARE | ontology, controlled vocabulary, data or information resource | Ontology that proposes concepts and roles to represent relationships of pharmacogenomics interest. | owl | is listed by: BioPortal | nlx_157546 | SCR_010406 | 2026-02-11 10:58:18 | 0 | |||||||||
|
Ontology for Drug Discovery Investigations Resource Report Resource Website |
Ontology for Drug Discovery Investigations (RRID:SCR_010383) | DDI | ontology, controlled vocabulary, data or information resource | Ontology for the description of drug discovery investigations. DDI aims to follow to the OBO (Open Biomedical Ontologies) Foundry principles, uses relations laid down in the OBO Relation Ontology, and be compliant with Ontology for biomedical investigations (OBI). | owl | is listed by: BioPortal | nlx_157514 | SCR_010383 | 2026-02-11 10:58:11 | 0 | |||||||||
|
Ontology for Genetic Susceptibility Factor Resource Report Resource Website |
Ontology for Genetic Susceptibility Factor (RRID:SCR_010386) | OGSF | ontology, controlled vocabulary, data or information resource | Application ontology to model / represent the notion of genetic susceptibility to a specific disease or an adverse event or a pathological biological process. It is developed using BFO2.0''s framwork. The ontology is under the domain of genetic epidemiology. | owl, genetic epidemiology | is listed by: BioPortal | nlx_157518 | SCR_010386 | 2026-02-11 10:58:18 | 0 | |||||||||
|
Cancer Research and Management ACGT Master Ontology Resource Report Resource Website |
Cancer Research and Management ACGT Master Ontology (RRID:SCR_006953) | ACGT-MO | ontology, controlled vocabulary, data or information resource | Ontology to represent the domain of cancer research and management in a computationally tractable manner. | owl | is listed by: BioPortal | nlx_157351 | SCR_006953 | ACGT Master Ontology | 2026-02-11 10:57:26 | 0 | ||||||||
|
ECO Resource Report Resource Website 10+ mentions |
ECO (RRID:SCR_002477) | ECO | ontology, controlled vocabulary, data or information resource | A controlled vocabulary that describes types of scientific evidence within the realm of biological research that can arise from laboratory experiments, computational methods, manual literature curation, and other means. Researchers can use these types of evidence to support assertions about research subjects that result from scientific research, such as scientific conclusions, gene annotations, or other statements of fact. ECO comprises two high-level classes, evidence and assertion method, where evidence is defined as a type of information that is used to support an assertion, and assertion method is defined as a means by which a statement is made about an entity. Together evidence and assertion method can be combined to describe both the support for an assertion and whether that assertion was made by a human being or a computer. However, ECO can not be used to make the assertion itself; for that, one would use another ontology, free text description, or other means. ECO was originally created around the year 2000 to support gene product annotation by the Gene Ontology. Today ECO is used by many groups concerned with provenance in scientific research. ECO is used in AmiGO 2 | evidence, assertion, assertion method, gene product, obo, evidence code, experiment, similarity, provenance |
is listed by: BioPortal is related to: AmiGO is related to: Gene Ontology has parent organization: University of Maryland School of Medicine; Maryland; USA has parent organization: Google Code |
NIGMS GM089636 | Free, Available for download, Freely available | nlx_155860 | http://code.google.com/p/evidenceontology/ http://bioportal.bioontology.org/ontologies/ECO |
SCR_002477 | Evidence Codes Ontology, Evidence Ontology, evidenceontology, The Evidence Ontology | 2026-02-11 10:56:28 | 19 | |||||
|
Medical image simulation Resource Report Resource Website 1+ mentions |
Medical image simulation (RRID:SCR_010355) | OntoVIP | ontology, controlled vocabulary, data or information resource | Ontology that describes the content of the models used in medical image simulation developed in the context of the Virtual Imaging Platform project (VIP), a french project aiming at sharing medical image simulation resources. This ontology can be used to annotate such models in order to highlight the different entities that are present in the 3D scene to be imaged, i.e. anatomical structures, pathological structures, foreign bodies, contrast agents etc. The model allows also to associate to these entities information about their physical qualities, which are used in the medical image simulation process (to mimick physical phenomena involved in CT, MR, US and PET imaging). This ontology partly relies on the OntoNeuroLOG ontology (ONL-DP ONL-MR-DA), as well as PATO, RadLex, FMA and ChEBI. | owl | is listed by: BioPortal | French National Research Agency ANR-09-COSI-03 | nlx_157472 | SCR_010355 | 2026-02-11 10:58:11 | 3 | ||||||||
|
Mental State Assessment Resource Report Resource Website 1+ mentions |
Mental State Assessment (RRID:SCR_010357) | ONL-MSA | ontology, controlled vocabulary, data or information resource | Ontology that is a module of the OntoNeuroLOG ontology that covers the field of mental state assessments, i.e. instruments, instrument variables, assessments, and resulting scores, developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeous resources in neuroimaging. It includes a generic domain core ontology, that provides a general model of such entities and a general taxonomy of behavioural, neurosychological and neuroclinical instruments, that can be easily extended to model any particular kind of instrument. It also includes such extensions for 8 relatively standard instruments, namely: (1) the Beck-depression-inventory-(BDI-II), (2) the Expanded-Disability-Status-Scale, (3) the Controlled-oral-word-association-test, (4) the Free-and-Cued-Selective-Reminding-Test-with-Immediate-Recall-16-item-version-(The-Grober-and-Buschke-test), (5) the Mini-Mental-State, (6) the Stroop-color-and-word-test, (7) the Trail-making-test-(TMT), (8) the Wechsler-Adult-Intelligence-Scale-third-edition, (9) the Clinical-Dementia-Rating-scale, (10) the Category-verbal-fluency, (11) the Rey-Osterrieth-Complex-Figure-Test-(CFT). | owl neuroimaging, mri, mental state assessment | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157474 | SCR_010357 | MSA ontology | 2026-02-11 10:58:17 | 1 | |||||||
|
Metagenome Sample Vocabulary Resource Report Resource Website |
Metagenome Sample Vocabulary (RRID:SCR_010358) | MSV | ontology, controlled vocabulary, data or information resource | An ontology for metagenome sample metadata that mainly defines predicates. | owl | is listed by: BioPortal | nlx_157475 | SCR_010358 | 2026-02-11 10:58:18 | 0 | |||||||||
|
Mosquito Gross Anatomy Ontology Resource Report Resource Website |
Mosquito Gross Anatomy Ontology (RRID:SCR_003839) | TGMA | ontology, controlled vocabulary, data or information resource | A structured controlled vocabulary of the anatomy of mosquitoes. | obo | is listed by: BioPortal | nlx_157485 | SCR_003839 | 2026-02-11 10:56:48 | 0 | |||||||||
|
CPTAC Proteomics Pipeline Infrastructure Ontology Resource Report Resource Website |
CPTAC Proteomics Pipeline Infrastructure Ontology (RRID:SCR_006945) | CPTAC | ontology, controlled vocabulary, data or information resource | A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project | owl | is listed by: BioPortal | nlx_157349 | SCR_006945 | 2026-02-11 10:57:29 | 0 | |||||||||
|
Provisional Cell Ontology Resource Report Resource Website 1+ mentions |
Provisional Cell Ontology (RRID:SCR_018332) | PCL | portal, ontology, controlled vocabulary, data or information resource | Collection of ontology of provisional cells determined by experimental methods. | Ontology, provisional cell, experimental method, BioPortal |
is related to: BioPortal is related to: BioPortal Metadata Ontology |
Free, Freely available | SCR_018332 | Provisional Cell Ontology | 2026-02-11 10:59:45 | 3 | ||||||||
|
Solanaceae Phenotype Ontology Resource Report Resource Website |
Solanaceae Phenotype Ontology (RRID:SCR_007832) | SPTO | ontology, controlled vocabulary, data or information resource | Ontology for Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance. | obo | is listed by: BioPortal | nlx_157592 | SCR_007832 | 2026-02-11 10:57:48 | 0 | |||||||||
|
Computer-Based Patient Record Ontology Resource Report Resource Website |
Computer-Based Patient Record Ontology (RRID:SCR_007540) | CPRO | ontology, controlled vocabulary, data or information resource | A uniform core set of data elements (whose formal semantics are captured in OWL) for use in a Computer-Based Patient Record (CPR) | owl | is listed by: BioPortal | nlx_157375 | https://code.google.com/p/cpr-ontology/ | SCR_007540 | 2026-02-11 10:57:37 | 0 | ||||||||
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Soy Ontology Resource Report Resource Website |
Soy Ontology (RRID:SCR_007847) | SOY | ontology, controlled vocabulary, data or information resource | Growth, trait and development ontology for soybean | obo |
is listed by: BioPortal has parent organization: SoyBase |
nlx_157593 | SCR_007847 | 2026-02-11 10:57:41 | 0 | |||||||||
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Healthcare Common Procedure Coding System Resource Report Resource Website |
Healthcare Common Procedure Coding System (RRID:SCR_007598) | HCPCS | ontology, controlled vocabulary, data or information resource | Ontology for the healthcare common procedure coding system. | umls | is listed by: BioPortal | nlx_157426 | SCR_007598 | 2026-02-11 10:57:37 | 0 | |||||||||
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Drug Interaction Knowledge Base Ontology Resource Report Resource Website |
Drug Interaction Knowledge Base Ontology (RRID:SCR_007591) | DIKB | ontology, controlled vocabulary, data or information resource | An evidence taxonomy for pharmacologic studies that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were supported by a specific set of evidence. | owl | is listed by: BioPortal | PMID:19435613 | nlx_157392 | SCR_007591 | 2026-02-11 10:57:42 | 0 |
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