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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Parkinson Society Canada
 
Resource Report
Resource Website
1+ mentions
Parkinson Society Canada (RRID:SCR_002014) nonprofit organization A not-for-profit, volunteer based charity whose purpose is to find a cure for Parkinson's disease through research, advocacy, education and support services. Parkinson Society Canadas leads initiatives that include: raising funds for research through national events; funding research, movement disorder clinics, and outreach programs across Canada; staffing a national Information and Referral Centre; developing educational and information materials; providing up to date detailed information about Parkinson's disease; and providing support for regional partners to better meet the needs of people living with Parkinson's services. Researchers can apply for various funding awards and fellowships by following the funding process outlined by Parkinson Society Canada. parkinson's disease, parkinson's disease online community, parkinson's disease organizations, parkinson's disease patient care, parkinson's disease therapy, parkinson's disease treatment center Parkinson's Disease Public, Funding is available to researchers in the form of awards and fellowships grid.453461.1, Crossref funder ID: 501100000263, nif-0000-11672 https://ror.org/04amfk357 SCR_002014 2026-02-14 02:00:13 3
Model 1025 MR-compatible Small Animal Monitoring and Gating System
 
Resource Report
Resource Website
1+ mentions
Model 1025 MR-compatible Small Animal Monitoring and Gating System (RRID:SCR_002090) Model 1025 Monitoring & Gating System instrument resource Magnetic resonance compatible monitoring and gating system, including software, that enables monitoring rectal temperature, electrocardiogram and respiration rate during magnetic resonance imaging scan time. The PC displays multiple waveforms, measured values, trends and gating pulses. The data Acquisition modules are controlled by menu driven software from the PC. Data acquisition modules are available to measure the following parameters: ECG, respiration (three ways), temperature (two ways), pressure including invasive blood pressure (two ways), oxygen saturation and end-tidal CO2. hardware, instrument, equipment, physiology, monitoring, gating, mr environment, respiration, temperature, blood pressure, oxygen saturation, end-tidal co2, magnetic resonance, electrocardiogram, magnetic resonance imaging, software resource Free, Freely available SciRes_000157 https://wikihost.uib.no/mriwiki/images/4/4c/SAInstruments_1025.pdf http://www.i4sa.com/web_app/main/defaultProduct.aspx?ID=82&PT=3 SCR_002090 Model 1025 Monitoring and Gating System, MR-Compatible Model 1025 Monitoring and Gating System, Small Animal Monitoring and Gating System 2026-02-14 02:00:22 3
Korea National Institute of Health
 
Resource Report
Resource Website
10+ mentions
Korea National Institute of Health (RRID:SCR_001959) KNIH institution Institute dedicated to medical research to improve biomedical innovation and public health in South Korea. health research institute, south korea is parent organization of: Genovar THIS RESOURCE IS NO LONGER IN SERVICE grid.415482.e, nlx_156100, ISNI: 0000 0004 0647 4899, Crossref funder ID: 501100003653 https://ror.org/00qdsfq65 SCR_001959 Korea NIH 2026-02-14 02:00:15 11
flowType
 
Resource Report
Resource Website
1+ mentions
flowType (RRID:SCR_001957) software resource Software for phenotyping Flow Cytometry assays using multidimentional expansion of single dimentional partitions. software package, mac os x, unix/linux, windows, r, flow cytometry is listed by: OMICtools
has parent organization: Bioconductor
PMID:22383736 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_05613 SCR_001957 flowType - Phenotyping Flow Cytometry Assays 2026-02-14 02:00:15 9
International Society for Magnetic Resonance in Medicine
 
Resource Report
Resource Website
1+ mentions
International Society for Magnetic Resonance in Medicine (RRID:SCR_001988) ISMRM institution The International Society for Magnetic Resonance in Medicine is an international, nonprofit, scientific association whose purpose is to promote communication, research, development, and applications in the field of magnetic resonance in medicine and biology and other related topics and to develop and provide channels and facilities for continuing education in the field. In addition to its large scientific meetings, the Society holds workshops and publishes two journals, Magnetic Resonance in Medicine and the Journal of Magnetic Resonance Imaging, and a newsletter, MR Pulse. It also sponsors study groups on specific areas of scientific interest and chapters based on geographical location. Its multidisciplinary membership of over 6,000 consists of clinicians, physicists, engineers, biochemists, and technologists. The ISMRMs inception, on January 1, 1994, resulted from a merger of the Society of Magnetic Resonance in Medicine and the Society of Magnetic Resonance Imaging forming the Society of Magnetic Resonance (now named the International Society for Magnetic Resonance in Medicine). The purposes of the Society are: (A) (i) To promote communication, research, development, applications, and the availability of information on magnetic resonance in medicine and biology and other related topics internationally; (ii) To develop and provide channels and facilities for continuing education and communication in the field, to publish and assist in the publishing of journals and other publications in the field; and (iii) To provide information and advice on those aspects of public policy which are concerned with magnetic resonance in medicine and biology and other related topics, and otherwise perform charitable, scientific and educational functions with respect to magnetic resonance applications in medicine and biology and other related topics. (B) To work with or for, and to co-operate with local, regional and national governments and governmental and private agencies, organizations, firms and institutions in efforts to accomplish one or more of the above purposes. (C) To ensure that scientists and clinicians working in the field have equal and fair opportunities to contribute to it. The site lists a partial list of NMR and MRI resources available on the World Wide Web. The content of these sites is not controlled or endorsed in any way by the ISMRM or SMRT. Sections devoted to MR safety and MRI information for patients is also available. Study groups are established to foster interaction among members with a common interest in topical and active areas of MR. If you are a member of the ISMRM or SMRT, you may become a member of any number of study groups; however, the cost of membership for each study group is US20. Recorded educational presentations, oral presentations, traditional posters, and electronic posters Available only to Meeting registrants - Now online biology, bookstore, collaboration, journals, magnetic resonance, medicine, mri, mr safety, newsletter, nmr, scientific association, study groups grid.420361.2, ISNI: 0000 0001 2107 6555, nif-0000-10673 https://ror.org/038wdy960 SCR_001988 ISMRM 2026-02-14 02:00:12 3
Wellcome Trust Case Control Consortium
 
Resource Report
Resource Website
100+ mentions
Wellcome Trust Case Control Consortium (RRID:SCR_001973) WTCCC data or information resource Consortium of 50 research groups across the UK to harness the power of newly-available genotyping technologies to improve our understanding of the aetiological basis of several major causes of global disease. The consortium has gathered genotype data for up to 500,000 sites of genome sequence variation (single nucleotide polymorphisms or SNPs) in samples ascertained for the disease phenotypes. Analysis of the genome-wide association data generated has lead to the identification of many SNPs and genes showing evidence of association with disease susceptibility, some of which will be followed up in future studies. In addition, the Consortium has gained important insights into the technical, analytical, methodological and biological aspects of genome-wide association analysis. The core of the study comprised an analysis of 2,000 samples from each of seven diseases (type 1 diabetes, type 2 diabetes, coronary heart disease, hypertension, bipolar disorder, rheumatoid arthritis and Crohn's disease). For each disease, the case samples have been ascertained from sites widely distributed across Great Britain, allowing us to obtain considerable efficiencies by comparing each of these case populations to a common set of 3,000 nationally-ascertained controls also from England, Scotland and Wales. These controls come from two sources: 1,500 are representative samples from the 1958 British Birth Cohort and 1,500 are blood donors recruited by the three national UK Blood Services. One of the questions that the WTCCC study has addressed relates to the relative merits of these alternative strategies for the generation of representative population cohorts. Genotyping for this main Case Control study was conducted by Affymetrix using the (commercial) Affymetrix 500K chip. As part of this study a total of 17,000 samples were typed for 500,000 SNPs. There are two additional components to the study. First, the WTCCC award is part-funding a study of host resistance to infectious diseases in African populations. The same approach has been used to type 2,000 cases of tuberculosis (TB) and 2,000 cases of malaria, as well as 2,000 shared controls. As well as addressing diseases of major global significance, and extending WTCCC coverage into the area of infectious disease, the inclusion of samples of African origin has obvious benefits with respect to methodological aspects of genome-wide association analysis. Second, the WTCCC has, for four additional diseases (autoimmune thyroid disease, breast cancer, ankylosing spondylitis, multiple sclerosis), completed an analysis of 15,000 SNPs designed to represent a large proportion of the known non-synonymous coding SNPs across the genome. This analysis has been performed at the WTSI using a custom Infinium chip (Illumina). Data release The genotypic data of the control samples (1958 British Birth Cohort and UK Blood Service) and from seven diseases analyzed in the main study are now available to qualified researchers. Summary genotype statistics for these collections are available directly from the website. Access to the individual-level genotype data and summary genotype statistics is by application to the Consortium Data Access Committee (CDAC) and approval subject to a Data Access Agreement. WTCCC2: A further round of GWA studies were funded in April 2008. These include 15 WTCCC-collaborative studies and 12 independent studies be supported totaling approximately 120,000 samples. Many of the studies represent major international collaborative networks that have together assembled large sample collections. WTCCC2 will perform genome-wide association studies in 13 disease conditions: Ankylosing spondylitis, Barrett's oesophagus and oesophageal adenocarcinoma, glaucoma, ischaemic stroke, multiple sclerosis, pre-eclampsia, Parkinson's disease, psychosis endophenotypes, psoriasis, schizophrenia, ulcerative colitis and visceral leishmaniasis. WTCCC2 will also investigate the genetics of reading and mathematics abilities in children and the pharmacogenomics of statin response. Over 60,000 samples will be analyzed using either the Affymetrix v6.0 chip or the Illumina 660K chip. The WTCCC2 will also genotype 3,000 controls each from the 1958 British Birth cohort and the UK Blood Service control group, and the 6,000 controls will be genotyped on both the Affymetrix v6.0 and Illumina 1.2M chips. WTCCC3: The Wellcome Trust has provided support for a further round of GWA studies in January 2009. These include 5 WTCCC-collaborative studies to be carried out in WTCCC3 and 5 independent studies, across a range of diseases. Many of the studies represent major international collaborative networks that have together assembled large sample collections. WTCCC3 will perform genome-wide association studies in the following 4 disease conditions: primary biliary cirrhosis, anorexia nervosa, pre-eclampsia in UK subjects, and the interactions between donor and recipient DNA related to early and late renal transplant dysfunction. The WTCCC3 will also carry out a pilot in a study of the genetics of host control of HIV-1 infection. Over 40,000 samples will be analyzed using the Illumina 660K chip. The WTCCC3 will utilize the 6,000 control genotypes generated by the WTCCC2. gene, genomic, genetics, microarray, genome-wide association study, snp, genome-wide association, blood, dna, genotype, variation, genome, sequence variant, copy number variation, genetic variation, phenotype, disease is related to: Psychiatric Genomics Consortium
has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
Bipolar disorder, Coronary artery disease, Crohn's disease, Rheumatoid arthritis, Type 1 diabetes, Type 2 diabetes, Hypertension, Control, Multiple sclerosis, Breast cancer, Ankylosing spondylitis, Autoimmune thyroid disease, Malaria, Tuberculosis, Inflammatory bowel disease, Barrett's esophagus, Esophageal adenocarcinoma, Glaucoma, Ischemic stroke, Pre-eclampsia, Parkinson's disease, Psychosis endophenotypes, Psoriasis, Schizophrenia, Ulcerative colitis, Visceral leishmaniasis, Primary biliary cirrhosis, Anorexia nervosa, Human immunodeficiency virus, Renal transplant dysfunction, Diabetes Wellcome Trust ;
Bill and Melinda Gates Foundation ;
Wellcome Trust Sanger Institute; Hinxton; United Kingdom
PMID:17554300 Access to summary data and individual-level genotype data is available by application to the Wellcome Trust Case Control Consortium Data Access Committee. Access to data will be granted to qualified investigators for appropriate use. nif-0000-10551 SCR_001973 Wellcome Trust Case-Control Consortium (WTCCC) 2026-02-14 02:00:12 213
NeuralAct
 
Resource Report
Resource Website
10+ mentions
NeuralAct (RRID:SCR_002066) NeuralAct software resource Software to visualize electrocorticographic (ECoG) and possibly also other kinds of neural activity (EEG / EMG/ DOT) on a 3D model of the cortical surface. The tool has been used to produce cortical activation images and image sequences in several recent studies using ECoG. The tool is written in matlab. The package is thoroughly documented and includes a demo. brain, imaging, electrocorticographic, eeg, meg, dot, matlab, cortex, visualization, neural activity NIH ;
NIBIB EB006356;
NIBIB EB000856;
United States army research office W911NF-08-1-0216;
United States army research office W911NF-07-1-0415
PMID:25381641 Free, Available for download, Freely available SciRes_000162 http://www.neuralgate.org/software SCR_002066 NeuralAct: A tool to visualize cortical activity on a 3D model of the cortex 2026-02-14 02:00:18 13
PurBayes
 
Resource Report
Resource Website
10+ mentions
PurBayes (RRID:SCR_002068) software resource An MCMC-based algorithm that uses next-generation sequencing data to estimate tumor purity and clonality for paired tumor-normal data. software package, unix/linux, mac os x, windows, r, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: CRAN
PMID:23749958 Free, Available for download, Freely available biotools:purbayes, OMICS_03561 https://bio.tools/purbayes http://cran.r-project.org/web/packages/PurBayes/ SCR_002068 PurBayes: Bayesian Estimation of Tumor Purity and Clonality 2026-02-14 02:00:18 10
XPP-Aut: X-Windows Phase Plane plus Auto
 
Resource Report
Resource Website
100+ mentions
XPP-Aut: X-Windows Phase Plane plus Auto (RRID:SCR_001996) software resource XPPAUT is a tool for solving differential equations, difference equations, delay equations, functional equations, boundary value problems, and stochastic equations. It evolved from a chapter written by John Rinzel and me on the qualitative theory of nerve membranes and eventually became a commercial product for MSDOS computers called PHASEPLANE. It is now available as a program running under X11 and Windows. The code brings together a number of useful algorithms and is extremely portable. All the graphics and interface are written completely in Xlib which explains the somewhat idiosyncratic and primitive widgets interface. XPP contains the code for the popular bifurcation program, AUTO . Thus, you can switch back and forth between XPP and AUTO, using the values of one program in the other and vice-versa. I have put a ``friendly'' face on AUTO as well. You do not need to know much about it to play around with it. XPP has the capabilities for handling up to 590 differential equations. There are over a dozen solvers including several for stiff systems, a solver for integral equations and a symplectic solver. Up to 10 graphics windows can be visible at once and a variety of color combinations is supported. PostScript output is supported as well as GIF and animator GIF movies Post processing is easy and includes the ability to make histograms, FFTs and applying functions to columns of your data. Equilibria and linear stability as well as one-dimensional invariant sets can be computed. Nullclines and flow fields aid in the qualitative understanding of two-dimensional models. Poincare maps and equations on cylinders and tori are also supported. Some useful averaging theory tricks and various methods for dealing with coupled oscillators are included primarily because that is what I do for a living. Equations with Dirac delta functions are allowable. I have added an animation package that allows you to create animated versions of your simulations, such as a little pendulum moving back and forth or lamprey swimming. See toys! for examples. There is a curve-fitter based on the Marquardt-Levenberg algorithm which lets you fit data points to the solutions to dynamical systems. It is possible to automatically generate "movies'' of three-dimensional views of attractors or parametric changes in the attractor as some parameters vary. Dynamically link to external subroutines XPP has been successfully compiled on a SPARC II under OpenLook, a SPARC 1.5 running generic X, a NeXT running X11R4, a DEC 5000, a PC using Linux or Windows, and SGI and an HP 730. It also runs under Win95/NT/98 if you have an X-Server. I cannot vouch for other platforms but it has been compiled on the IBM RS6000. Building XPP requires only the standard C compiler, and Xlib. Look at the any README files that come with the distribution for solutions to common compilation problems. functional equations, boundary value problems, delay equations, difference equations, differential equations, membranes, nerve, stochastic equations has parent organization: University of Pittsburgh; Pennsylvania; USA THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10767 SCR_001996 XPP as well as XPPAUT 2026-02-14 02:00:21 193
TRAMS
 
Resource Report
Resource Website
1+ mentions
TRAMS (RRID:SCR_002003) TRAMS software resource A software program for functional annotation of genomic single nucleotide polymorphisms (SNPs) which is available to download as a single file executable for WINDOWS users with limited computational experience and as a Python script for Mac OS and Linux users. It needs only a tab delimited text file containing SNP locations, reference nucleotide and SNPs in different strains along with a reference genome sequence in standard GenBank or EMBL format. It annotates SNPs as synonymous, non-synonymous or nonsense. Non-synonymous SNPs in start and stop codons are separated as non-start and non-stop SNPs, respectively. SNPs in overlapping features are annotated separately for each feature and multiple nucleotide polymorphisms (MNPs) within a codon are combined prior to annotation. A workflow has also been developed for use in Galaxy to map short reads to a reference genome and extract and annotate the SNPs. single nucleotide polymorphism, windows, python, mac os, linux, synonymous, non-synonymous, nonsense, annotate, genomic variation is listed by: OMICtools
is related to: Galaxy
has parent organization: FigShare
PMID:23828175 Free, Available for download, Freely available OMICS_01924 SCR_002003 Tool for Rapid Annotation of Microbial SNPs, Tool for rapid annotation of microbial SNPs: a simple program for rapid annotation of genomic variation in prokaryotes, Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes, TRAMS: a simple program for rapid annotation of genomic variation in prokaryotes 2026-02-14 02:00:16 1
Vennt
 
Resource Report
Resource Website
1+ mentions
Vennt (RRID:SCR_002083) software resource A web-tool to generate dynamic Venn diagrams for differential gene expression. unix/linux, mac os x, windows, python is listed by: OMICtools Free, Available for download, Freely available OMICS_03549 https://github.com/drpowell/vennt SCR_002083 Vennt - Dynamic Venn diagrams for Differential Gene Expression 2026-02-14 02:00:22 7
TEQC
 
Resource Report
Resource Website
10+ mentions
TEQC (RRID:SCR_001943) software resource An R/Bioconductor package for quality assessment of target enrichment experiments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on. standalone software, unix/linux, mac os x, windows, r, genetics, microarray, quality control, sequencing is listed by: OMICtools
has parent organization: Bioconductor
PMID:21398674 Free, Available for download, Freely available OMICS_03602 SCR_001943 TEQC - Quality control for target capture experiments 2026-02-14 02:00:15 14
flowViz
 
Resource Report
Resource Website
10+ mentions
flowViz (RRID:SCR_002075) software resource Software that provides visualization tools for flow cytometry data. software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, infrastructure, visualization is listed by: OMICtools
has parent organization: Bioconductor
PMID:18245128 Free, Available for download, Freely available OMICS_05615 SCR_002075 flowViz - Visualization for flow cytometry 2026-02-14 02:00:14 30
Cell Signaling Technology
 
Resource Report
Resource Website
10000+ mentions
Cell Signaling Technology (RRID:SCR_002071) CST commercial organization Privately held company that develops and produces antibodies, ELISA kits, ChIP kits, proteomic kits, and other related reagents used to study cell signaling pathways that impact human health. antibodies, ELISA kits, ChIP kits, proteomic kits, cell signaling pathways ISNI: 0000 0004 0580 0138, nlx_152330, Wikidata: Q3392342, SCR_004431, grid.420530.0, nif-0000-20826 https://ror.org/03k4zc121 SCR_002071 2026-02-14 02:00:18 12336
mubiomics
 
Resource Report
Resource Website
1+ mentions
mubiomics (RRID:SCR_006785) mubiomics software resource A set of scripts (mostly python) for processing reads generated by the Roche 454 or Illumina next-gen sequencing platforms. Included are quality control, read demultiplexing and microbiome characterisation scripts for use with usearch, pplacer and RDP classifier. is listed by: OMICtools
has parent organization: SourceForge
OMICS_01059 SCR_006785 mubiomics - Scripts for processing next-gen sequencing data 2026-02-14 02:01:15 3
ShortRead
 
Resource Report
Resource Website
100+ mentions
ShortRead (RRID:SCR_006813) ShortRead software resource Software package for input, quality assessment and exploration of high-throughput sequence data. Used for input, quality assurance, and basic manipulation of `short read'' DNA sequences such as those produced by Solexa, 454, and related technologies, including exible import of common short read data formats. high throughput sequence data, short read, DNA sequences, short read data is listed by: OMICtools
is listed by: Debian
is listed by: SoftCite
has parent organization: Bioconductor
PMID:19654119 Free, Available for download, Freely available OMICS_01076 https://sources.debian.org/src/r-bioc-shortread/ SCR_006813 ShortRead - Classes and methods for high-throughput short-read sequencing data. 2026-02-14 02:01:24 225
mutationSeq
 
Resource Report
Resource Website
10+ mentions
mutationSeq (RRID:SCR_006815) mutationSeq software resource A software suite using feature-based classifiers for somatic mutation prediction from paired tumour/normal next-generation sequencing data. mutationSeq has the advantages of integrating different features (e.g., base qualities, mapping qualities, strand bias, and tailed distance features), and validated somatic mutations to make predictions. Given paired normal/tumour bam files, mutationSeq will output the probability of each candidate site being somatic. next-generation sequencing, somatic mutation, tumor, normal is listed by: OMICtools
is related to: JointSNVMix
has parent organization: BC Cancer Agency
Tumor, Normal PMID:22084253 OMICS_00086 SCR_006815 2026-02-14 02:01:23 24
University of Rostock; Mecklenburg-Vorpommern; Germany
 
Resource Report
Resource Website
1+ mentions
University of Rostock; Mecklenburg-Vorpommern; Germany (RRID:SCR_006816) university Public university located in Rostock, Mecklenburg-Vorpommern, Germany. Founded in 1419. is parent organization of: neuroVIISAS
is parent organization of: SysZNF - C2H2 Zinc Finger genes
nlx_151399, grid.10493.3f, Wikidata:Q159895, ISNI:121858338 https://ror.org/03zdwsf69 SCR_006816 Universit�t Rostock, University of Rostock, Universitat Rostock 2026-02-14 02:01:16 1
RIPSeeker
 
Resource Report
Resource Website
10+ mentions
RIPSeeker (RRID:SCR_006810) RIPSeeker software resource A statistical software package for identifying protein-associated transcripts from RIP-seq experiments. Infer and discriminate RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation. rip-seq is listed by: OMICtools
has parent organization: Bioconductor
GNU General Public License, v2 OMICS_00569 SCR_006810 RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments 2026-02-14 02:01:13 10
BioBricks Foundation
 
Resource Report
Resource Website
10+ mentions
BioBricks Foundation (RRID:SCR_006779) BBF institution The BioBricks Foundation (BBF) is dedicated to advancing synthetic biology to benefit all people and the planet. To achieve this, we must make engineering biology easier, safer, equitable, and more open. We do this in the following ways: by ensuring that the fundamental building blocks of synthetic biology are freely available for open innovation; by creating community, common values and shared standards; and by promoting biotechnology for all constructive interests. We envision a world in which scientists and engineers work together using BioBric parts freely available standardized biological parts to create safe, ethical solutions to the problems facing humanity. We envision synthetic biology as a force for good in the world. We see a future in which architecture, medicine, environmental remediation, agriculture, and many other fields are using the technology of synthetic biology. Our supporters are many and include corporations, individuals, institutions, foundations, government, corporations, and others. Currently, the BBF''s key programs include: * BIOFAB * BioBrick Public Agreement * Technical Standards Framework * Conferences and Workshops * BBF Global Network * OpenWetWare is parent organization of: OpenWetWare grid.487833.3, nlx_19572 https://ror.org/03kqtp318 SCR_006779 2026-02-14 02:01:22 35

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