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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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ResearchInformatics.org Resource Report Resource Website |
ResearchInformatics.org (RRID:SCR_004487) | community building portal, blog, portal, data or information resource, wiki, narrative resource | An open-access portal for discussion, information sharing, and collaboration among those working to advance the rapidly developing field of clinical research informatics (CRI). We hope that you find the content useful and that you use our interactive features to contribute your knowledge and experience for the benefit of our community. Research Informatics.org Contents include: * CRI Initiatives * CRI News * CRI Events * CRI Resources * CRI Wiki * CRI Forum * CRI Blog | clinical informatics, medical informatics, translational research, informatics, clinical | nlx_47438 | SCR_004487 | Research Informatics.org, Clinical Research Informatics Wiki, CRI Wiki | 2026-02-14 02:00:57 | 0 | ||||||||||
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NEXTDB Resource Report Resource Website 10+ mentions |
NEXTDB (RRID:SCR_004480) | NextDB | data analysis service, expression atlas, analysis service resource, data or information resource, production service resource, atlas, service resource, database | Expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans through EST analysis and systematic whole mount in situ hybridization. NEXTDB is the database to integrate all information from their expression pattern project and to make the data available to the scientific community. Information available in the current version is as follows: * Map: Visual expression of the relationships among the cosmids, predicted genes and the cDNA clones. * Image: In situ hybridization images that are arranged by their developmental stages. * Sequence: Tag sequences of the cDNA clones are available. * Homology: Results of BLASTX search are available. Users of the data presented on our web pages should not publish the information without our permission and appropriate acknowledgment. Methods are available for: * In situ hybridization on whole mount embryos of C.elegans * Protocols for large scale in situ hybridization on C.elegans larvae | rnai phenotype, homology, blast, fasta, chromosome map, cosmid, gene, cdna clone, genome, in situ hybridization, expressed sequence tag, developmental stage, sequence, embryonic caenorhabditis elegans, chromosome, phenotype, blastx, clone, sequence tag, yac, predicted gene, protein, development, larval caenorhabditis elegans, image collection, experimental protocol, FASEB list |
is related to: Expression Patterns for C. elegans promoter GFP fusions is related to: Expression Patterns for C. elegans promoter GFP fusions has parent organization: National Institute of Genetics; Shizuoka; Japan |
Core Research for Evolutional Science and Technology ; Japan Science and Technology Corporation ; Japanese Ministry of Education Culture Sports Science and Technology MEXT |
Permission required, Acknowledgement required | nlx_46406 | SCR_004480 | Nematode Expression Pattern DataBase | 2026-02-14 02:00:41 | 35 | ||||||
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Scientific Data Sharing Project Resource Report Resource Website |
Scientific Data Sharing Project (RRID:SCR_004481) | knowledge environment, data or information resource, portal, topical portal | While many data sharing programs exist worldwide, widespread sharing of raw data has not yet won across-the-board acceptance in the scientific community, and the very existence of all these databases makes the approach fractured at best. The Data Sharing Project, launched last year by University of California-San Francisco Professor Michael Weiner, has two goals: One is to make widespread raw data sharing a reality initially in the realm of medicine through creation of a repository system accessible to all researchers; the second goal is to foster broad scientific support for this move and its adoption in other fields of research. With major projects such as the Human Genome Project demonstrating the tremendous scientific breakthroughs made possible by data sharing and with the decline of technological barriers impeding such efforts, the time has come to work to achieve widespread sharing of raw data worldwide. The Data Sharing Project proposes to further this goal initially in the field of medicine by working to create a raw data sharing program that will serve as a model to other disciplines attempting to make their own way in this arena. The Northern California Institute for Research and Education (NCIRE) together with the University of California-San Francisco and support from the Michael J. Fox Foundation is now in the process of canvassing the scientific community to analyze the best possible data sharing program and practices to establish in the field of medicine. | has parent organization: University of California at San Francisco; California; USA | Michael J. Fox Foundation | nlx_46687 | SCR_004481 | Data Sharing Project | 2026-02-14 02:00:57 | 0 | |||||||||
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Rocky Mountain MS Center Tissue Bank Resource Report Resource Website |
Rocky Mountain MS Center Tissue Bank (RRID:SCR_004361) | Rocky Mountain MS Center Tissue Bank | biomaterial supply resource, material resource, tissue bank, brain bank | Scientists throughout the world depend on the Rocky Mountain MS Center Tissue Bank to supply high quality human brain tissue and cerebral spinal fluid to support their research. Funded in part by the National MS Society, the Tissue Bank is one of only four MS-related tissue banks in the nation. The Tissue Bank has distributed specimens to more than 160 investigators worldwide and over 1,600 people have consented to be donors after death. Tissue banks provide a unique bridge between those who live with MS and the scientific community. Studies conducted with samples from the Center have led to several important discoveries and 130 publications. While deeply personal, the decision to donate has far-reaching effects as scientists unlock the mysteries of multiple sclerosis. If you would like to donate, arrangements must be made in advance because it is important that tissue is taken within a few hours of death. For more information on making a donation, visit the How To Donate section of this website and contact the Rocky Mountain MS Center Tissue Bank at 303.788.4030 x111. | brain tissue, cerebral spinal fluid, research, multiple sclerosis, brain, tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Rocky Mountain MS Center |
Multiple Sclerosis | National MS Society | Public | nlx_143691 | SCR_004361 | Rocky Mountain Multiple Sclerosis Center Tissue Bank, Tissue Bank: Rocky Mountain MS Center | 2026-02-14 02:00:43 | 0 | |||||
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Soybean Ontologies Resource Report Resource Website 1+ mentions |
Soybean Ontologies (RRID:SCR_004514) | Soybean Ontologies | data or information resource, ontology, controlled vocabulary | Controlled vocabulary for soybean field growth stages (Soybean Whole Plant Growth Ontology), plant structure names (Soybean Structure Ontology), development (Soybean Development Ontology) and plant traits (Soybean Trait Ontology). These are only a suggestion. Input from the community will be necessary to update and extend the ontologies. Because of this, these ontologies should also be considered a work in progress. Where applicable, soybean specific terms have been associated with their Plant Ontology (PO) and Gramene Plant Trait Ontology (TO) synonyms to facilitate cross species comparisons. Please feel free to contact them for corrections, additions, and questions. | plant, growth, structure, development, trait, developmental stage |
is related to: Plant Ontology is related to: Trait Ontology has parent organization: SoyBase |
The community can contribute to this resource | nlx_49793 | SCR_004514 | SoyBase Soybean Ontologies, SoyBase Ontologies | 2026-02-14 02:00:58 | 5 | |||||||
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Functional Genomics Data Society Resource Report Resource Website 10+ mentions |
Functional Genomics Data Society (RRID:SCR_004358) | FGED, MGED | data or information resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 7, 2022. Functional Genomics Data Society - FGED Society, founded in 1999 as the MGED Society, advocates for open access to genomic data sets and works towards providing concrete solutions to achieve this. Our goal is to assure that investment in functional genomics data generates the maximum public benefit. Our work on defining minimum information specifications for reporting data in functional genomics papers have already enabled large data sets to be used and reused to their greater potential in biological and medical research. We work with other organizations to develop standards for biological research data quality, annotation and exchange. We facilitate the creation and use of software tools that build on these standards and allow researchers to annotate and share their data easily. We promote scientific discovery that is driven by genome wide and other biological research data integration and meta-analysis. | functional genomics | is parent organization of: MGED Ontology | Illumina | THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_37824 | SCR_004358 | MGED Society, FGED Society | 2026-02-14 02:00:58 | 30 | ||||||
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SysMO-DB Resource Report Resource Website 1+ mentions |
SysMO-DB (RRID:SCR_004479) | experimental protocol, community building portal, people resource, portal, data or information resource, source code, service resource, software resource, narrative resource, database | SysMO-DB is a project that is creating a web-based platform, and tooling, for finding, sharing and exchanging Data, Models and Processes in Systems Biology. It was designed to support the SysMO Consortium (Systems Biology for Micro-Organisms), but the principles and methods employed are equally applicable to other multi-site Systems Biology projects. All code is open source and available for download. SEEK, a component of SysMO-DB, is a private community collaboration and asset sharing platform for Systems Biology models, data and protocols serving 120 research institutions throughout Europe. SEEK is the main web-based access point to the system and provides an access control layer to enable researchers to restrict access to collaborators, colleagues or other individuals until they are ready to share with the whole consortium or the wider community. The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that: * facilitates and maximizes the potential for data exchange between SysMO research groups; * maximizes the ''shelf life'' and utility of data generated by SysMO; * provides an integrated platform for the dissemination of the results of the SysMO projects to the scientific community; and * facilitates standardization of practices in Systems Biology for the interfacing of modeling and experimentation. We follow several key principles: * exploit what is already available, both within the consortium and outside it, and do not reinvent; * identify the least we can do to make a benefit and do this incrementally. SysMO-DB will soon be opening it up to the wider scientific community, but for now it is currently only available for those within the SysMO consortium. |
is related to: FAIRDOMHub has parent organization: University of Manchester; Manchester; United Kingdom has parent organization: Heidelberg Institute for Theoretical Studies; Heidelberg; Germany is parent organization of: SysMO JERM Ontology of Systems Biology for Micro-Organisms |
nlx_46298 | SCR_004479 | SysMO Database, Systems Biology for Micro-Organisms Database, Systems Biology for Micro-Organisms DB, Systems Biology of Micro-Organisms DB, SysMO DB, Systems Biology of Micro-Organisms Database | 2026-02-14 02:00:59 | 3 | ||||||||||
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John Theurer Cancer Center Resource Report Resource Website |
John Theurer Cancer Center (RRID:SCR_004359) | JTCC | data or information resource, portal, topical portal | Throughout the past 25 years, John Theurer Cancer Center at Hackensack University Medical Center has become one of the largest and most comprehensive cancer centers in the United States. Today, we are a top 50 U.S. News and World Report Best Hospitals for cancer the only cancer center in New Jersey with this prestigious designation. Its mission is to deliver extraordinary care that is multidisciplinary, personalized, innovative, and at the appropriate cost with superior outcomes to the most satisfied patients. Year after year, we have harnessed the newest technologies and retained world-class physicians, nurses and scientists to help service the needs of our patients within our 14 specialized cancer divisions. | cancer | is parent organization of: Hackensack University Tissue Bank | nlx_143712 | SCR_004359 | 2026-02-14 02:00:39 | 0 | |||||||||
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WHO International Clinical Trials Registry Platform Resource Report Resource Website 100+ mentions |
WHO International Clinical Trials Registry Platform (RRID:SCR_004475) | ICTRP | data repository, storage service resource, clinical trial, data or information resource, service resource, database | Public database of information about all clinical trials involving humans, this global initiative provides a single point of access to information about ongoing and completed clinical trials. It contains the trial registration data sets made available by data providers around the world meeting criteria for content and quality control. It also aims to: * To improve the comprehensiveness, completeness and accuracy of registered clinical trial data * To communicate and raise awareness of the need to register clinical trials * To ensure the accessibility of registered data * To build capacity for clinical trial registration * To encourage the utilization of registered data * To ensure the sustainability of the ICTRP The mission of the WHO International Clinical Trials Registry Platform is to ensure that a complete view of research is accessible to all those involved in health care decision making. This will improve research transparency and will ultimately strengthen the validity and value of the scientific evidence base. The registration of all interventional trials is a scientific, ethical and moral responsibility. The ICTRP: * Publishes the ICTRP Search Portal * Supports the WHO Registry Network * Supports countries and regions wanting to establish WHO-compliant clinical trial registries or policies on trial registration. | clinical trial, registry, health care, intervention, FASEB list |
lists: Clinical Trials Registry - India is related to: ChiCTR - Chinese Clinical Trial Registry has parent organization: World Health Organization |
Public | nlx_143764, r3d100012586 | https://doi.org/10.17616/R3BF58 | SCR_004475 | International Clinical Trials Registry Platform (ICTRP), International Clinical Trials Registry Platform, WHO ICTRP | 2026-02-14 02:00:44 | 322 | ||||||
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Roswell Park Cancer Institute Resource Report Resource Website 1+ mentions |
Roswell Park Cancer Institute (RRID:SCR_004471) | RPCI | institution | America''s first cancer center founded by Dr. Roswell Park. His revolutionary model of a multidisciplinary approach to cancer with scientists and clinicians working in concert and in consult has become the standard by which all modern-day comprehensive cancer centers are measured. RPCI is among the first and only upstate New York facility to hold the National Cancer Institute designation of comprehensive cancer center and to serve as a member of the prestigious National Comprehensive Cancer Network. Many RPCI faculty serve on the NCCN panels that create the Clinical Practice Guidelines in OncologyTM the internationally recognized standards for clinical policy in oncology, and the most comprehensive, most frequently updated clinical practice guidelines available in any area of medicine. Over its long history, Roswell Park Cancer Institute has made fundamental contributions to reducing the cancer burden and has successfully maintained an exemplary leadership role in setting the national standards for cancer care, research and education. Over the last decade, RPCI has undergone major growth, adding over 1,000 new jobs, initiating one of the nation''s first hospital facilities dedicated to Phase I cancer research studies, and setting itself apart as a leader in surgical robotics, vitamin D research, immunotherapy and vaccine therapy, studies targeting tumor microenvironment and cancer prevention, and the development and testing of new agents and technology. *Research: From its inception, Roswell Park Cancer Institute identified cancer research as a core element of its mission. Since then, groundbreaking research by RPCI scientists has led to greater understanding of the nature of cancer and to major advances in cancer diagnosis and treatment. * Education: Roswell Park''s excellent faculty and strong alliances with the University at Buffalo, as well as other local and regional colleges and universities, enables the Institute to provide a superior, comprehensive education in several fields. | cancer, research, education |
is parent organization of: RPCI Gene Targeting and Transgenic Shared Resource is parent organization of: Roswell Park Data Bank and BioRepository is parent organization of: RPCI Pathology Resource Network is parent organization of: Blood Group Antigen Gene Mutation Database |
nlx_143749 | SCR_004471 | 2026-02-14 02:00:59 | 2 | |||||||||
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CardioVascular Research Grid (CVRG) Resource Report Resource Website 1+ mentions |
CardioVascular Research Grid (CVRG) (RRID:SCR_004472) | CVRG | data repository, storage service resource, data analysis service, analysis service resource, data or information resource, production service resource, atlas, service resource, image repository | Infrastructure for sharing cardiovascular data and data analysis tools. Human ExVivo heart data set and canine ExVivo normal and failing heart data sets are available. Canine hearts atlas and human InVivo atlases are available. | human, heart, canine, ex vivo, in vivo, protein microarray, cardiomyopathy, electrocardiogram, heart fiber, data sharing, microarray, data analysis tool, data analysis, mri, diffusion magnetic resonance imaging, diffusion weighted imaging, dti, cardiovascular, source code, web service, imaging |
is recommended by: National Library of Medicine is related to: Galaxy is related to: XNAT - The Extensible Neuroimaging Archive Toolkit is related to: NIH Data Sharing Repositories has parent organization: Johns Hopkins University; Maryland; USA is parent organization of: Cardiac Electrophysiology Ontology is parent organization of: Electrocardiography Ontology |
Normal, Failing heart, Cardiomyopathy, Ischemic cardiomyopathy, Non-ischemic cardiomyopathy | NHLBI R24 HL085343 | Free, Freely Available | r3d100012849, nlx_143758 | https://doi.org/10.17616/R3323J | SCR_004472 | The Cardiovascular Research Grid, Cardio Research Grid | 2026-02-14 02:00:41 | 4 | ||||
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ACT: Artemis Comparison Tool Resource Report Resource Website 10+ mentions |
ACT: Artemis Comparison Tool (RRID:SCR_004507) | ACT | software resource | A free tool for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyze regions of similarity and difference between genomes and to explore conservation of synteny, in the context of the entire sequences and their annotation. It is based on the software for Artemis, the genome viewer and annotation tool. ACT runs on UNIX, GNU/Linux, Macintosh and MS Windows systems. It can read complete EMBL and GENBANK entries or sequences in FASTA or raw format. Other sequence features can be in EMBL, GENBANK or GFF format. | dna sequence, genome, synteny, pairwise comparison |
is listed by: OMICtools has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
Wellcome Trust | PMID:15976072 | GNU General Public License | OMICS_00928, nlx_48986 | SCR_004507 | Artemis Comparison Tool | 2026-02-14 02:00:44 | 46 | |||||
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Defense and Veterans Brain Injury Center Resource Report Resource Website 1+ mentions |
Defense and Veterans Brain Injury Center (RRID:SCR_004505) | DVBIC | disease-related portal, portal, data or information resource, research forum portal, narrative resource, training material, topical portal | The Defense and Veterans Brain Injury Center (DVBIC) is a congressionally mandated collaboration of the Department of Defense (DoD) and Veterans Affairs (VA) health centers serving patients with traumatic brain injury (TBI). Its mission is to serve active duty military, their beneficiaries, and veterans with traumatic brain injuries (TBIs) through state-of-the-art clinical care, innovative clinical research initiatives and educational programs. DVBIC fulfills this mission through ongoing collaboration with military, VA and civilian health partners, local communities, families and individuals with TBI. In 2008, DVBIC''s mission expanded to include Force Health Protection and Management. This encompasses the following Department of Defense (DoD) programs: * TBI Surveillance * TBI Registry * Pre-deployment neurocognitive testing * Family Caregiver Curriculum * 15 year longitudinal study of TBI * Independent study of automated neurocognitive tests DVBIC has been named the Office of Responsibility or Executive Agency for these programs. The DVBIC multi-site network includes a growing number of DoD and VA hospitals as well as civilian TBI rehabilitation programs. Each DVBIC site works collaboratively to provide and improve TBI care for active duty military, veterans and their eligible beneficiaries. DVBIC''s multi-center network design and collaborations with forward medical commands allows for clinical innovation along the entire continuum of care: from initial injury in the war zone through to medical evacuation, acute care, rehabilitation and ultimately a return to community, family, and work or continued duty when possible. WHAT WE DO * Develop and provide advanced TBI-specific evaluation, treatment and follow-up care for military personnel, their beneficiaries, and veterans with mild to severe TBIs * Conduct clinical research that defines optimal care and treatment for individuals with TBI * Develop and deliver effective educational materials and programming for the prevention, assessment and treatment of TBI including the management of its continuing effects. DVBIC is specifically committed to the effort to prevent, treat, and provide education on TBI for US military members currently on active duty, National Guard and reservists recently injured in the line of duty, their beneficiaries, and retired military personnel. * Oversee congressionally-mandated DoD TBI programs All of the above are done through innovative collaborations among the Armed Forces, VA, federal agencies, and coordinating academic institutions. | head injury, traumatic brain injury, clinical care, clinical research, longitudinal study, concussion, one mind tbi |
has parent organization: Defense Centers of Excellence for Psychological Health and Traumatic Brain Injury has parent organization: U.S. Department of Defense has parent organization: U.S. Department of Veterans Affairs |
United States Department of Defense | nlx_143817 | SCR_004505 | Defense and Veterans Head Injury Program, DVHIP | 2026-02-14 02:00:57 | 3 | |||||||
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Danish Multiple Sclerosis Center Resource Report Resource Website 1+ mentions |
Danish Multiple Sclerosis Center (RRID:SCR_004424) | DMSC | institution | The Danish Multiple Sclerosis Center (DMSC) comprises the MS Clinic and the MS Research Unit including the Neuroimmunology Laboratory. The main research areas are: clinical research including investigator driven trials of new therapies in MS, neuroimaging, neuropsychology and rehabilitation; pathogenesis of MS with focus on immunology, biomarkers and treatment response; as well as studies in the pathology and genetics of MS. DMSC is part of the Department of Neurology, Rigshospitalet, and the Faculty of Medicine, University of Copenhagen. The research facilities are located in sections 6311 and 9392 at the hospital site. DMSC constitutes one of the European MS Centers of Excellence and has extensive collaboration with institutions in Denmark, in other European countries, as well as overseas. DMSC is supported by both national and international grants. | multiple sclerosis |
has parent organization: University of Copenhagen; Copenhagen; Denmark is parent organization of: Danish Multiple Sclerosis Biobank |
nlx_143734, grid.488278.9 | https://ror.org/04anq5q02 | SCR_004424 | 2026-02-14 02:00:40 | 4 | ||||||||
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Squeezambler Resource Report Resource Website |
Squeezambler (RRID:SCR_004385) | Squeezambler | software resource | Software to sequence and de novo assemble all distinct genomes present in a microbial sample with a sequencing cost and computational complexity proportional to the number of genome types, rather than the number of cells. |
is listed by: OMICtools has parent organization: Wayne State University; Michigan; USA |
PMID:23918251 | OMICS_01503 | SCR_004385 | 2026-02-14 02:00:56 | 0 | |||||||||
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Biointeractive Resource Report Resource Website 10+ mentions |
Biointeractive (RRID:SCR_004388) | BioInteractive | podcast, training resource, data or information resource, video resource, narrative resource, training material | Collection of biology-focused teaching materials created and administered by the Howard Hughes Medical Institute including free lectures, videos and animations for science education. Many of the resources are also available on DVD and CD-ROM. In addition to the resources on the website, BioInteractive offers DVDs of HHMI''s annual Holiday Lectures on Science and CD-ROMs of the Virtual Lab series. These materials are available to educators for free and can be ordered from the catalog at http://catalog.hhmi.org. Each Holiday Lectures on Science is a set of four one-hour lectures presented each December at the headquarters of the Howard Hughes Medical Institute in Chevy Chase, Maryland . The lectures give students and teachers the opportunity to learn about cutting-edge biomedical research directly from some of the world''s leading scientists. Intended to inspire young students to pursue careers in science, the lectures bring the latest developments in a rapidly moving field of research into the classroom. The lectures are primarily geared to high school students in honors and Advanced Placement biology classes. Other high school students and undergraduates can certainly benefit from the content of the lectures. Some of the related materials on the biointeractive website (http://www.biointeractive.org/) are aimed at a broader audience. With a teacher''s guidance, middle school students can also enjoy learning about the topic. Holiday Lectures are webcast live at http://www.hhmi.org/biointeractive/hl/. Following the live event, they are available as on-demand streaming video at the same Web address. Webcasts of all past Holiday Lectures are available as on-demand streaming video at http://www.hhmi.org/biointeractive/lectures/index.html. Holiday Lectures are also available as podcasts from http://www.hhmi.org/biointeractive/podcast_popup.html | teaching, animation, lecture, evolution, infectious disease, biodiversity, stem cell, obesity, cancer, genomics, chemical genetics, sex determination, biological clock, cardiovascular, immunology, dna, rna, transgenic fly, bacterial identification, cardiology, neurophysiology, immunology, teacher guide, activity, poster |
is used by: NIF Data Federation is used by: Integrated Videos is related to: Integrated Podcasts has parent organization: Howard Hughes Medical Institute |
nlx_40070 | SCR_004388 | HHMI BioInteractive, Howard Hughes Medical Institute BioInteractive | 2026-02-14 02:00:40 | 11 | ||||||||
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Childhood Brain Tumor Foundation Resource Report Resource Website 1+ mentions |
Childhood Brain Tumor Foundation (RRID:SCR_004421) | CBTF | institution | The Childhood Brain Tumor Foundation (CBTF), an all-volunteer organization, was founded in 1994 by families, friends and physicians of children with brain tumors. Our mission is to raise funds for scientific research and heighten public awareness of this most devastating disease and to improve prognosis and quality of life for those that are affected. Founded and incorporated in Virginia, relocated to Maryland in 1998, the Foundation (a 501(c) (3), strives to meet the goals of our mission. Friends, families, and physicians brought CBTF together and are dedicated to serving the needs of families and children with brain tumors, in hopes of improving the quality of life and find cures for pediatric brain tumors. Annually, CBTF funds basic science or clinical research for pediatric brain tumors; conferences and other programs. We provide informational materials on our website and mail other information (nationally and internationally) upon request. The Childhood Brain Tumor Foundation (CBTF) has funded state-of-the-art research and supported conferences for pediatric brain tumors over the past 17 years. Grants submissions are reviewed thoroughly by our dedicated renown team of scientific advisors to ensure that CBTF selects the highest quality research for pediatric brain tumors. Each year, we receive so many outstanding applications and it is through the support of private and public donations that this is all possible. With your support, together, we will strive to find a cure for children''s brain tumors. | brain tumor, child, human, pediatric, tumor, cancer, brain | grid.478649.0, ISNI: 0000 0004 5902 3100, nlx_143731, Crossref funder ID: 100002725 | https://ror.org/02aqe0j14 | SCR_004421 | 2026-02-14 02:00:57 | 2 | |||||||||
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SNiPer-HD Resource Report Resource Website 1+ mentions |
SNiPer-HD (RRID:SCR_004383) | SNiPer-HD | software resource | Improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays. | is listed by: OMICtools | PMID:17062589 | OMICS_00735 | SCR_004383 | SNiPer-HD: Improved genotype calling accuracy | 2026-02-14 02:00:58 | 2 | ||||||||
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Stem Cell Commons Resource Report Resource Website 1+ mentions |
Stem Cell Commons (RRID:SCR_004415) | Stem Cell Commons | data repository, storage service resource, analysis service resource, data set, data or information resource, production service resource, source code, service resource, software resource, database | Open source environment for sharing, processing and analyzing stem cell data bringing together stem cell data sets with tools for curation, dissemination and analysis. Standardization of the analytical approaches will enable researchers to directly compare and integrate their results with experiments and disease models in the Commons. Key features of the Stem Cell Commons * Contains stem cell related experiments * Includes microarray and Next-Generation Sequencing (NGS) data from human, mouse, rat and zebrafish * Data from multiple cell types and disease models * Carefully curated experimental metadata using controlled vocabularies * Export in the Investigation-Study-Assay tabular format (ISA-Tab) that is used by over 30 organizations worldwide * A community oriented resource with public data sets and freely available code in public code repositories such as GitHub Currently in development * Development of Refinery, a novel analysis platform that links Commons data to the Galaxy analytical engine * ChIP-seq analysis pipeline (additional pipelines in development) * Integration of experimental metadata and data files with Galaxy to guide users to choose workflows, parameters, and data sources Stem Cell Commons is based on open source software and is available for download and development. | therapeutic target, blood, stem cell, self-renewal, embryonic stem cell, hematopoietic stem cell, leukemia stem cell, gene, protein, phenotype, therapeutic, annotate, share, analyze, data sharing, statistics, visualize, analyze, microarray, next-generation sequencing, statistics, transcription profiling, genome, genome browser, disease model |
is related to: Galaxy is related to: ISA Infrastructure for Managing Experimental Metadata has parent organization: Harvard Stem Cell Institute |
Normal, Acute Myelogenous Leukemia, Glioblastoma, Primitive Neuroectodermal Tumor, Etc. | PMID:24303302 | Open unspecified license | nlx_42085 | http://bloodprogram.hsci.harvard.edu/ | SCR_004415 | HSCI Blood Genomics, Harvard Stem Cell Institute Blood Genomics, Harvard Stem Cell Institute Blood Program, HSCI Blood Program | 2026-02-14 02:00:43 | 2 | ||||
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DigiMorph Resource Report Resource Website 50+ mentions |
DigiMorph (RRID:SCR_004416) | DigiMorph | data or information resource, image, video resource, narrative resource, training material, database | A dynamic archive of information on digital morphology and high-resolution X-ray computed tomography of biological specimens serving imagery for more than 750 specimens contributed by almost 150 collaborating researchers from the world''s premiere natural history museums and universities. Browse through the site and see spectacular imagery and animations and details on the morphology of many representatives of the Earth''s biota. Digital Morphology, part of the National Science Foundation Digital Libraries Initiative, develops and serves unique 2D and 3D visualizations of the internal and external structure of living and extinct vertebrates, and a growing number of ''invertebrates.'' The Digital Morphology library contains nearly a terabyte of imagery of natural history specimens that are important to education and central to ongoing cutting-edge research efforts. Digital Morphology visualizations are now in use in classrooms and research labs around the world and can be seen in a growing number of museum exhibition halls. The Digital Morphology site currently presents: * QuickTime animations of complete stacks of serial CT sections * Animated 3D volumetric movies of complete specimens * Stereolithography (STL) files of 3D objects that can be viewed interactively and rapidly prototyped into scalable physical 3D objects that can be handled and studied as if they were the original specimens * Informative introductions to the scanned organisms, often written by world authorities * Pertinent bibliographic information on each specimen * Useful links * A course resource for our ''Digital Methods for Paleontology'' course, in which students learn how to generate all of the types of imagery displayed on the Digital Morphology site | image archive, x-ray computed tomographic scanner, x-ray computed tomography, scientific name, common name, cladogram, dinosaur, tapir, horned lizard, endocast, bat, primate, FASEB list | has parent organization: University of Texas at Austin; Texas; USA | NSF | The images may be used for the personal education of website visitors. Any commercial reproduction, Redistribution, Publication, Or other use of the website content, By electronic means or otherwise, Is prohibited unless pursuant to a written agreement signed by the copyright holder. | nlx_143746, r3d100011511 | https://doi.org/10.17616/R3TD0C | SCR_004416 | Digital Morphology library, Digital Morphology | 2026-02-14 02:00:58 | 74 |
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