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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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NIA Mouse cDNA Project Home Page Resource Report Resource Website 10+ mentions |
NIA Mouse cDNA Project Home Page (RRID:SCR_001472) | niaEST | material resource, biomaterial supply resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Project portal housing NIA Mouse EST Project, NIA Mouse cDNA Clone Sets, a NIA Mouse Gene Index, NIA Mouse cDNA Database, and NIA Mouse Microarrays. Characteristics of NIA 15K Mouse cDNA Clone Set * ~15,000 unique cDNA clones were rearrayed among 52,374 ESTs from pre- and periimplantation embryos, E12.5 female gonad/mesonephros, and newborn ovary. * Up to 50% are derived from novel genes. * ~1.5 kb average insert size. * Clones were sequenced from 5' and 3' termini to obtain longer reads and verify sequence. Sequence information is available at this Web Site. Clone names are from H3001A01 to H3159G07. * Handling of NIA 15k cDNA Clone Set(June3, 2000) Characteristics of NIA mouse 7.4K cDNA Clone Set * ~7407 cDNA clones with no redundancy within the set or with NIA Mouse 15K. * ~1.5 kb average insert size for short insert clones and ~2.5-3.0 kb average insert size for long-insert enriched clones.. * Clones were sequenced from 5' and 3' termini to obtain longer reads and verify sequence. Sequence information is available at this Web Site. Clone names are from H4001A01 to H4079G07. * Handling of NIA mouse 7.4k cDNA Clone Set (similar to handling of NIA mouse 15K, to be updated) Individual Clones are available from ATCC and MRC geneservice, UK. To obtain Clone, search the database using either the rearrayed clone name or GenBank accession number at the Key Word Search page. Follow the link to the sequence information page for the rearrayed clone to obtain source clone ATCC number. Clicking the ATCC number will bring up the ATCC ordering page for the source clone. There is essentially no overlap between the two clone sets (7.4K and 15K) said Minoru S.H. Ko, M.D., Ph.D., head of the Developmental Genomics and Aging Section in the NIA's Laboratory of Genetics. In addition, all cDNA clones in the NIA 7.4K set were purified by single colony isolation and sequence-verified, and more than half were prepared by a new procedure that yields long full-length cDNAs (average size 3-4 kb). The NIA Mouse 15k and 7.4k Clone Set Data and Published Microarray Data are available for download. NIA Mouse Microarrays *Microarray Data Download * 60-mer Oligo Array Platform ** (A) NIA 22k Oligo Microarray Gene List (21939 gene features) ( Carter et al 2003 ) ** (B) Agilent Mouse Development Oligo Microarray Gene List ** ( Subset of Microarray (A): 20,280 gene features ) * Data Analysis Tools | embryonic, expression, fetal, gene, cdna, cell, clone set, human disease, microarray, mouse, mouse model, newborn, stem cell, tissue, clone |
uses: ATCC is listed by: One Mind Biospecimen Bank Listing has parent organization: Intramural Research Program |
Aging | NIA 1ZIAAG000656-11 | PMID:14744099 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-09471 | SCR_001472 | NIA Mouse cDNA Project, Mouse cDNA Project | 2026-02-15 09:18:06 | 12 | ||||
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ALSA - The Australian Longitudinal Study of Ageing Resource Report Resource Website |
ALSA - The Australian Longitudinal Study of Ageing (RRID:SCR_013146) | ALSA | material resource, biomaterial supply resource | The general purpose of ALSA is to examine how social, biomedical, psychological, economic, and environmental factors are associated with age-related changes in the health and wellbeing of persons aged 70 years and older. The aim is to analyze the complex relationships between individual and social factors and changes in health status, health care needs and service utilization dimensions, with emphasis given to the effects of social and economic factors on morbidity, disability, acute and long-term care service use, and mortality. The study was designed to have common instrumentation with US studies. ALSA collected data from a random, stratified sample of all persons (both community and institution-dwelling) aged 70 years and older living in the metropolitan area of Adelaide, South Australia, using the State Electoral Database as the sampling frame. Spouses aged 65 and older and other household members aged 70 years and older also were invited to participate. The initial baseline data collection for ALSA began in September 1992 and was completed in March 1993. In the first wave, personal interviews were carried out for 2,087 participants, including 566 couples (that is, persons 70 years of age and over and their spouse, if 65 and over). Clinical assessments were obtained for 1,620 of the participants. Respondents were recontacted by telephone a year after initial interview (wave 2). The third wave of the study began in September 1994 and involved a complete reassessment, with a total of 1,679 interviews and 1,423 clinical assessments. To date, eleven waves of data have been collected, with the latest collection in May 2010, from 168 participants. Six of these waves were conducted via face-to-face interviews and clinical assessments, and five were telephone interviews. Future waves are planned, however are dependent on grant funding. Ancillary data collection has been ongoing since the initiation of the study, e.g., from secondary providers. Lists of ALSA participants are compared biannually with the agencies'' lists to determine the prevalence and incidence of receipt of services from these organizations. Another source of information has been the collection of data from the participants'' general practitioners about the respondent''s health status, history of services received, medication use, referrals to specialists, and current services provided. Baseline Sample Size: 2087 Dates of Study: 1992����������2010 (potentially ongoing) Study Features: * Longitudinal * International * Anthropometric Measures * Biospecimens Waves 1-5 (ICPSR), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06707 Wave 6 (ICPSR), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/03679 | has parent organization: Flinders University; Adelaide; Australia | Aging | Office for the Ageing ; ECH Inc ; Premier Science Research Fund ; National Health and Medical Research Council Australia ID22922; Australian Research Council Discovery Projects DP0879152; NIA AG08523 |
Public: The ALSA study welcomes requests from people for access to the data. Requests for data must be in writing, Using the ALSA Study Data Request Form (DOC 56KB). Data are archived at ICPSR. | nlx_149436 | SCR_013146 | Australian Longitudinal Study of Ageing, Australian Longitudinal Study of Aging (ALSA), Australian Longitudinal Study of Aging, ALSA - The Australian Longitudinal Study of Aging, Australian Longitudinal Study of Ageing (ALSA) | 2026-02-15 09:20:25 | 0 | ||||||
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Willoughby–Hoye Python Scripts A-D Resource Report Resource Website 1+ mentions Issue |
Willoughby–Hoye Python Scripts A-D (RRID:SCR_017562) | software application, data processing software, data analysis software, software resource | Software tool as scripts for calculating NMR chemical shifts. Warning - this group of Python scripts used to process NMR data, described in Willoughby et al, 2014, has been found to contain bug. Please see PMID:31591889. | Python, NMR, script, caluclating, chemical, shift, data | NIA R01 AG039468 | PMID:24556787 PMID:31591889 |
Free, Freely available | SCR_017562 | 2026-02-15 09:22:08 | 1 | |||||||||
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Omics Discovery Index Resource Report Resource Website 10+ mentions |
Omics Discovery Index (RRID:SCR_010494) | OmicsDI, DDI, DDICC | data or information resource, database, portal | Portal for dataset discovery across a heterogeneous, distributed group of transcriptomics, genomics, proteomics and metabolomics data resources. These resources span eight repositories in three continents and six organisations, including both open and controlled access data resources. | dataset search, knowledge framework, knowledge discovery |
is affiliated with: MetabolomeXchange is affiliated with: ProteomeXchange has parent organization: University of California at San Diego; California; USA is parent organization of: Integrated Datasets |
NIA 1U24AI117966-01; NIGMS 1U54GM114833-01 |
Free, Public | nlx_158507, SCR_014747 | SCR_010494 | Omics Discovery Index (OmicsDI) | 2026-02-15 09:20:18 | 27 | ||||||
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GeneNetwork Resource Report Resource Website 100+ mentions |
GeneNetwork (RRID:SCR_002388) | GeneNetwork, WebQTL | data repository, database, storage service resource, service resource, data or information resource | Web platform that provides access to data and tools to study complex networks of genes, molecules, and higher order gene function and phenotypes. Sequence data (SNPs) and transcriptome data sets (expression genetic or eQTL data sets). Quantitative trait locus (QTL) mapping module that is built into GN is optimized for fast on-line analysis of traits that are controlled by combinations of gene variants and environmental factors. Used to study humans, mice (BXD, AXB, LXS, etc.), rats (HXB), Drosophila, and plant species (barley and Arabidopsis). Users are welcome to enter their own private data. | Variation, trait, vertebrate trait ontology, phenotype, systems genetics, quantitative trait, gene mapping, experimental precision medicinenetwork analysis, causal modeling, genomic location, genotype, inbred strain, sex, heterogeneous stock, phenome, phenotype, QTL, expression QTL, genetic reference population, single nucleotide polymorphism, RNA expression, protein expression, metabolite expression, metagenomics, epigenomics, gene-by-environmental interaction, epistasis, FAIR data standards, open source software, FASEB list |
is used by: NIF Data Federation is used by: Hypothesis Center is related to: NIH Data Sharing Repositories has parent organization: University of Tennessee Health Science Center; Tennessee; USA |
NIGMS R01 GM123489; NIAAA U01 AA016662; NIAAA U01 AA13499; NIAAA U24 AA13513; NIAAA U01 AA014425; NIA R01 AG043930; NIDA P20 DA21131; NCI U01 CA105417; NCRR U24 RR021760 |
PMID:8043953 PMID:11737945 PMID:15043217 PMID:15114364 PMID:15043220 PMID:15043219 PMID:15711545 PMID:18368372 PMID:27933521 |
Restricted | nif-0000-00380 | SCR_002388 | GeneNetwork and WebQTL, GeneNetwork / WebQTL, www.genenetwork.org, GeneNetwork WebQTL, The GeneNetwork / WebQTL | 2026-02-16 09:45:43 | 473 | |||||
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Collaborative Cohort of Cohorts for COVID-19 Research Resource Report Resource Website 1+ mentions |
Collaborative Cohort of Cohorts for COVID-19 Research (RRID:SCR_026322) | C4R | data or information resource, topical portal, disease-related portal, portal | Portal provides information about nationwide study of more than 50,000 individuals to determine factors that predict disease severity and long-term health impacts of COVID-19. | nationwide study, determine factors, predict disease severity, long-term health impacts, COVID-19 | COVID-19 | NHLBI ; NINDS ; NIA |
SCR_026322 | 2026-02-15 09:23:14 | 1 | |||||||||
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Morpholino Database Resource Report Resource Website 1+ mentions |
Morpholino Database (RRID:SCR_001378) | MODB | data repository, database, storage service resource, service resource, data or information resource | Central database to house data on morpholino screens currently containing over 700 morpholinos including control and multiple morpholinos against the same target. A publicly accessible sequence-based search opens this database for morpholinos against a particular target for the zebrafish community. Morpholino Screens: They set out to identify all cotranslationally translocated genes in the zebrafish genome (Secretome/CTT-ome). Morpholinos were designed against putative secreted/CTT targets and injected into 1-4 cell stage zebrafish embryos. The embryos were observed over a 5 day period for defects in several different systems. The first screen examined 184 gene targets of which 26 demonstrated defects of interest (Pickart et al. 2006). A collaboration with the Verfaillie laboratory examined the knockdown of targets identified in a comparative microarray analysis of hematopoietic stem cells demonstrating how microarray and morpholino technologies can be used in conjunction to enrich for defects in specific developmental processes. Currently, many collaborations are underway to identify genes involved in morphological, kidney, skin, eye, pigment, vascular and hematopoietic development, lipid metabolism and more. The screen types referred to in the search functions are the specific areas of development that were examined during the various screens, which include behavior, general morphology, pigmentation, toxicity, Pax2 expression, and development of the craniofacial structures, eyes, kidneys, pituitary, and skin. Only data pertaining to specific tests performed are presented. Due to the complexity of this international collaboration and time constraints, not all morpholinos were subjected to all screen types. They are currently expanding public access to the database. In the future we will provide: * Mortality curves and dose range for each morpholino * Preliminary data regarding the effectiveness of each morpholino * Expanded annotation for each morpholino * External linkage of our morpholino sequences to ZFIN and Ensembl. To submit morpholino-knockdown results to MODB please contact the administrator for a user name and password. | morpholino, target mrna, embryonic zebrafish, sequence, target, blast, phenotype, anatomy, development, behavior, morphology, pigmentation, toxicity, pax2 expression, craniofacial structure, eye, kidney, pituitary, skin, name, target name, target sequence, gene target, genetic, mortality, toxicity, defect, function, gene annotation, genome, data analysis service |
uses: Zebrafish Information Network (ZFIN) uses: PATO has parent organization: Mayo Clinic Minnesota; Minnesota; USA |
NIGMS GM63904; NIA CA65493 |
PMID:18179718 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152566 | SCR_001378 | MODB (MOprholino DataBase) | 2026-02-16 09:45:28 | 1 | |||||
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Taub Institute for Research on Alzheimers Disease and the Aging Brain Resource Report Resource Website |
Taub Institute for Research on Alzheimers Disease and the Aging Brain (RRID:SCR_008802) | brain bank, tissue bank, material resource, biomaterial supply resource | An institute which conducts research of Alzheimer's, Parkinson's and other age-related brain diseases. This organization also provides clinical evaluations to patients with memory problems, Alzheimer's disease or other types of dementia. Furthermore, the institute leads multi-center clinical trials for the treatment and prevention of Alzheimer's, Parkinson's and other age-related brain diseases. There is a brain donation program for enrolled/examined patients. The Education Core of the Taub Institute sponsors community events and Continuing Medical Education programs, as well as the distribution of periodic newsletters and brochures highlighting research developments and other Alzheimer's topics. | alzheimer's disease, parkinson's disease, age-related brain disease, neurodegenerative disease, late adult human, frontotemporal lobar degeneration, lewy body dementia, vascular disease, metabolic disease, geriatric psychiatry, normal aging, autopsy, brain tissue, brain, tissue, imaging, clinical trial, cell biology, neuroscience, cognitive neuroscience |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Columbia University; New York; USA |
Alzheimer's disease, Parkinson's disease, Age-related brain disease, Neurodegenerative disease, Frontotemporal lobar degeneration, Lewy body dementia, Vascular disease, Metabolic disease, Aging | NIA ; Taub Family Foundation |
nlx_144343 | SCR_008802 | Taub Institute ADRC, Taub Center for Alzheimer's Disease Research, Taub Institute Alzheimer's Disease Research Center, Taub Institute for Research on Alzheimer’s Disease | 2026-02-16 09:47:16 | 0 | |||||||
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Massachusetts Alzheimer's Disease Research Center Resource Report Resource Website 1+ mentions |
Massachusetts Alzheimer's Disease Research Center (RRID:SCR_008764) | MADRC, ADRC | brain bank, tissue bank, material resource, biomaterial supply resource | An Alzheimer's disease research center which supports new research and enhances ongoing research by providing core support to bringing together behavioral, biomedical, and clinical scientists. The Center conducts multidisciplinary research, trains scientists, and spreads information about Alzheimer's disease and related disorders to the general public. The principal goal of the Massachusetts ADRC is to support research in aging, Alzheimer's Disease and other related disorders. Researchers work with national and international multi-disciplinary teams to understand: normal aging, the transition from normal aging to mild forms of memory problems, and the later stages of dementia. The Massachusetts ADRC has an active brain donation program at the Massachusetts General Hospital (MGH) for patients as well as subjects enrolled in research studies. | brain, tissue, healthy control, alzheimer's disease, neurological disease, parkinson's disease, frontotemporal dementia, dementia with lewy bodies, dementia, neurodegenerative disease |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Harvard Medical School; Massachusetts; USA |
Aging, Alzheimer's disease, Neurological disease, Parkinson's disease, Frontotemporal dementia, Pick's disease, Primary Progressive Aphasia, Dementia with Lewy bodies, Dementia, Progressive Supranuclear Palsy, Corticobasal Degeneration, Vascular dementia, Cerebral Amyloid Angiopathy, Dementia pugilistica, Boxer's Syndrome, Neurodegenerative disease | U.S. Department of Health and Human Services ; NIA |
Public, Available to the research community | nlx_144104 | SCR_008764 | Massachusetts ADRC, Massachusetts Alzheimer's Disease Research Center | 2026-02-16 09:47:16 | 1 | |||||
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Rush Alzheimer's Disease Center Resource Report Resource Website 1+ mentions |
Rush Alzheimer's Disease Center (RRID:SCR_008763) | RADC | brain bank, tissue bank, material resource, biomaterial supply resource | An Alzheimer's disease center which researches the cause, treatment and prevention of Alzheimer's disease with a focus on four main areas of research: risk factors for Alzheimer's and related disorders, the neurological basis of the disease, diagnosis, and treatment. Data includes a number of computed variables that are available for ROS, MAP and MARS cohorts. These variables are under categories such as affect and personality, chronic medical conditions, and clinical diagnosis. Specimens include ante-mortem and post-mortem samples obtained from subjects evaluated by ROS, MAP and clinical study cores. Specimen categories include: Brain tissue (Fixed and frozen), Spinal cord, Muscles (Post-mortem), and Nerve (Post-mortem), among other types of specimens. Data sharing policies and procedures apply to obtaining ante-mortem and post-mortem specimens from participants evaluated by the selected cohorts of the RADC. | clinical, post mortem, ante mortem, late adult human, brain, tissue, spinal cord, muscle, nerve, dna, lymphocyte, serum, plasma, urine, fixed, frozen, cryopreserved, alzheimer's disease, memory | is listed by: One Mind Biospecimen Bank Listing | Alzheimer's disease, Alzheimer's-related disorder, Aging | NIA | Available to the research community, Data sharing policies apply to both data and specimens | nlx_144050 | SCR_008763 | Rush ADC, Rush Alzheimer's Disease Center | 2026-02-16 09:47:16 | 3 | |||||
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NYU Alzheimer's Disease Center Resource Report Resource Website |
NYU Alzheimer's Disease Center (RRID:SCR_008754) | NYU ADC | brain bank, tissue bank, material resource, biomaterial supply resource | The NYU Alzheimer's Disease Center is part of the Department of Psychiatry at New York University School of Medicine. The center's goals are to advance current knowledge and understanding of brain aging and Alzheimer's disease, to expand the numbers of scientists working in the field of aging and Alzheimer's research, to work toward better treatment options and care for patients, and to apply and share its findings with healthcare providers, researchers, and the general public. The ADC's programs and services extend to other research facilities and to healthcare professionals through the use of its core facilities. The NYU ADC is made up of seven core facilities: Administrative Core, Clinical Core, Neuropathology Core, Education Core, Data Management and Biostatistics Core, Neuroimaging Core, and Psychosocial Core. | brain, tissue, alzheimer's disease, dementia, meeting resource, clinical, imaging, neuroimaging, psychosocial, post-mortem, autopsy, vaccination, treatment |
is listed by: One Mind Biospecimen Bank Listing has parent organization: New York University School of Medicine; New York; USA |
Alzheimer's disease, Dementia, Aging | NIA | Available to collaborators | nlx_144383 | http://www.med.nyu.edu/adc/ | SCR_008754 | NYU Alzheimer's Disease Center, New York University Alzheimer's Disease Center | 2026-02-16 09:47:15 | 0 | ||||
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Layton Center NeuroImaging Laboratory Resource Report Resource Website 1+ mentions |
Layton Center NeuroImaging Laboratory (RRID:SCR_008823) | laboratory portal, organization portal, data analysis service, analysis service resource, image collection, portal, production service resource, service resource, data or information resource | NeuroImaging laboratory focused on detecting early brain changes associated with cognitive decline and dementia that manages the neuroimaging component of all studies at the Layton Aging and Alzheimer's Center including acquisition and archival services, as well as volumetric analysis of anonymized MRI scans. Assistance with resulting data is also available, including statistical analysis, and preparation of materials for presentation and publication. The Layton Center also manages a library of thousands of digitized MRI scans, including what is believed to be the largest collection of longitudinal MRI scans of cognitively intact elderly subjects. The OADC Neuroimaging Lab conducts MRI studies on both 3 and 7T MRI systems using advanced sequences, employing a multimodal approach to brain imaging research. | normal, mri, magnetic resonance imaging assay, neuroimaging, brain, longitudinal, late adult human | has parent organization: OHSU Layton Aging and Alzheimer's Disease Center | Aging, Alzheimer's disease, Cognitive decline, Cognitively intact, Dementia | NIA | nlx_144447 | SCR_008823 | Layton Aging and Alzheimer's Center NeuroImaging Laboratory, Layton Aging & Alzheimer's Disease Center Neuro-Imaging Lab, Layton Aging Alzheimer's Disease Center Neuro-Imaging Lab, Layton Center Neuro-Imaging Lab, Layton Aging and Alzheimer's Disease Center Neuro-Imaging Lab, Layton Aging and Alzheimer's Center Neuro-Imaging Lab | 2026-02-16 09:47:16 | 1 | |||||||
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OHSU Layton Aging and Alzheimer's Disease Center Resource Report Resource Website |
OHSU Layton Aging and Alzheimer's Disease Center (RRID:SCR_008821) | training resource, topical portal, portal, data or information resource, disease-related portal | An aging and Alzheimer's disease research center that conducts studies of treatments, technologies for patient support, genetics, neuroimaging, and pathology. The Center's clinical research focuses on understanding differing rates of progression and cognitive decline as compared to optimal cognitive health in the elderly and are currently studying methods of gauging the progression of Alzheimer’s disease through research in genetics, neuroimaging, and cerebrospinal fluid biomarkers. Clinical trials performed at the Center include drugs targeted to ameliorate the symptoms of memory failure and slow the progression of disease. | alzheimer's disease, late adult human, dementia, brain, oregon, training resource, aging, clinical research, clinical trial |
has parent organization: Oregon Health and Science University; Oregon; USA is parent organization of: Layton Center Clinical Data Resources is parent organization of: Layton Center NeuroImaging Laboratory is parent organization of: Layton Center Biomarkers and Genetics is parent organization of: Layton Aging and Alzheimers Disease Center Education Core is parent organization of: Layton Alzheimers Disease Center Biomarkers and Genetics Core Lab is parent organization of: Layton Alzheimers Disease Center Clinical Core |
Aging, Alzheimer's disease | NIA | Public | nlx_144445 | SCR_008821 | Layton Aging and Alzheimers Disease Center, Layton Center, OHSU Layton Center, C. Rex and Ruth H. Layton Aging and Alzheimer’s Disease Center | 2026-02-16 09:47:16 | 0 | ||||||
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Stanford/VA Aging Clinical Research Center Resource Report Resource Website 1+ mentions |
Stanford/VA Aging Clinical Research Center (RRID:SCR_008678) | ACRC | brain bank, tissue bank, material resource, biomaterial supply resource | Portal for gerontology research with a variety of clinical, research and educational programs, with the aim of improving the lives of those affected by Alzheimer's Disease and memory losses associated with normal aging. The Center investigates the nature of Alzheimer's Disease, its progression over time, its response to treatments, and problems patients and caregivers experience in dealing with the changes that occur. It also conducts studies that look at changes that occur over the course of normal aging and have a Normal Aging Brain Donor Program. The Aging Clinical Research Center puts out a newsletter that showcases various projects and includes informative articles on dementia. | gerontology, alzheimer's disease, memory loss, normal aging, dementia, late adult human, post-traumatic stress disorder, sleep disorder, brain tissue, tissue, brain, depressive disorder, late adult human, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Stanford University School of Medicine; California; USA is parent organization of: Geriatric Depression Scale is parent organization of: Signal Detection Software for Receiver Operator Characteristics is parent organization of: Geriatric Psychiatry Knowledge Test |
Aging, Alzheimer's disease, Memory loss, Dementia | NIA ; United States Department of Veterans Affairs |
Public, Available to the research community | nlx_143944 | http://alzheimer.stanford.edu | SCR_008678 | Stanford/VA ACRC | 2026-02-16 09:47:14 | 1 | ||||
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University of Pennsylvania Center for Neurodegenerative Disease Research Resource Report Resource Website |
University of Pennsylvania Center for Neurodegenerative Disease Research (RRID:SCR_008798) | medical school program resource, graduate program resource, postdoctoral program resource, training resource, degree granting program, topical portal, portal, data or information resource, disease-related portal | A research institution which conducts clinical research to understand brain dysfunction and degeneration in Alzheimer's disease (AD), Parkinson's disease (PD), Frontotemporal disease (FTD), Amyotrophic Lateral Sclerosis (ALS or Lou Gehrig's disease), and other age-related neurodegenerative disorders. This organization also houses a general training program that has a focus on drug discovery. This program teaches trainees in etiology, pathogenesis, and diagnosis and treatment of Alzheimer's disease, Parkinson's disease, frontotemporal dementias, motor neuron disease and related disorders. This program also trains Ph.D and M.D/Ph.D students, as well scientists, physicians, and veterinarians who have already completed their advanced degree and are looking for a postdoctoral research fellowship. The program is designed to give a solid background in basic and translational neuroscience, and related disciplines. | alzheimer's disease, parkinson's disease, frontotemporal disease, amyotrophic lateral sclerosis, neurodegenerative disease, late adult human, motor neuron disease, primary lateral sclerosis, frontotemporal disease with parkinsonism, lewy body disease, frontotemporal lobar degeneration, drug discovery |
has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA is parent organization of: Penn Alzheimer's Disease Center is parent organization of: University of Pennslyvania Brain Bank |
Aging | NIA | nlx_144492 | SCR_008798 | Penn Center for Neurodegenerative Disease Research, Penn CNDR | 2026-02-16 09:47:16 | 0 | |||||||
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GTRACT Resource Report Resource Website 1+ mentions |
GTRACT (RRID:SCR_009651) | GTRACT | software application, data processing software, software toolkit, image processing software, image analysis software, software resource | A Diffusion Tensor fiber tracking software suite that includes streamline tracking tools. The fiber tracking includes a guided tracking tool that integrates apriori information into a streamlines algorithm. This suite of programs is built using the NA-MIC toolkit and uses the Slicer3 execution model framework to define the command line arguments. These tools can be fully integrated with Slicer3 using the module discovery capabilities of Slicer3. NOTE: All new development is being managed in a github repository. Please visit, https://github.com/BRAINSia/BRAINSTools | c++, dicom, macos, microsoft, modeling, morphology, magnetic resonance, nifti, posix/unix-like, quantification, tensor metric, tractography, windows, dti, diffusion tensor fiber tracking, fiber tracking, nrrd, algorithm, connectivity |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: 3D Slicer has parent organization: University of Iowa; Iowa; USA |
Aging | NARSAD ; NINDS R01NS050568-01A2S1; NINDS 5R01NS040068-04; NIMH 5R01MH063405-04; NIMH 5R01MH031593-23; NIMH 2R01MH040856-17A2; NIA 5K23AG020649-03; NIDCR 5R01DE014399-04 |
PMID:16631385 | BSD License | nlx_155992 | SCR_009651 | Guided Tensor Restore Anatomical Connectivity Tractography | 2026-02-16 09:47:27 | 2 | ||||
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Boston University Alzheimer's Disease Center Resource Report Resource Website 1+ mentions |
Boston University Alzheimer's Disease Center (RRID:SCR_010692) | BU ADC | training resource, topical portal, portal, data or information resource, disease-related portal | The goal of the Alzheimers Disease Center is to help reduce the human and economic costs associated with Alzheimers disease through the advancement of knowledge. The primary missions of the Center are to: conduct and facilitate cutting-edge Alzheimers disease research; enhance clinical care for Alzheimers disease patients and their families; and provide education regarding Alzheimers disease to both professional and lay audiences. The Center is made up of a multidisciplinary group of professionals dedicated to research, clinical care, and education. | alzheimers, research, patient, family, education, disease related portal, training resource |
has parent organization: Boston University School of Medicine; Massachusetts; USA is parent organization of: Boston University Alzheimer's Disease Center Neuropathology Core Facility |
Alzheimer's disease | NIA | Public | nlx_80502 | SCR_010692 | BU Alzheimers Disease Center | 2026-02-16 09:47:49 | 1 | |||||
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Mayo Alzheimer's Disease Research Center Resource Report Resource Website |
Mayo Alzheimer's Disease Research Center (RRID:SCR_008727) | Mayo ADRC | data or information resource, organization portal, portal | A clinical research department that specializes in the study of Alzheimer's disease. The Mayo Clinic Alzheimer's Disease Research Center conducts many types of research studies related to dementia, as well as normal or successful aging. The purpose of the center is to provide care for dementia patients and promote research and education on Alzheimer's Disease and related dementias. | alzheimer's disease, mild cognitive impairment, early dementia, lewy body dementia, dementia, normal control, late adult human, healthy, memory, neuroimaging, department portal |
has parent organization: Mayo Clinic Florida; Florida; USA has parent organization: Mayo Clinic Minnesota; Minnesota; USA is parent organization of: Mayo Clinic Jacksonville: Neuropathology and Microscopy |
Aging | NIA | Public, Available to the research community | nlx_144139 | http://mayoresearch.mayo.edu/mayo/research/alzheimers_center/index.cfm | SCR_008727 | Mayo Clinic Alzheimer's Disease Research Center, Mayo Alzheimer's Disease Research Center | 2026-02-16 09:47:15 | 0 | ||||
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TRACULA Resource Report Resource Website 10+ mentions |
TRACULA (RRID:SCR_013152) | TRACULA | data processing software, software application, software resource | Software tool developed for automatically reconstructing a set of major white matter pathways in the brain from diffusion weighted images using probabilistic tractography. This method utilizes prior information on the anatomy of the pathways from a set of training subjects. By incorporating this prior knowledge in the reconstruction procedure, our method obviates the need for manual intervention with the tract solutions at a later stage and thus facilitates the application of tractography to large studies. The trac-all script is used to preprocess raw diffusion data (correcting for eddy current distortion and B0 field inhomogenities), register them to common spaces, model and reconstruct major white matter pathways (included in the atlas) without any manual intervention. trac-all may be used to execute all the above steps or parts of it depending on the dataset and user''''s preference for analyzing diffusion data. Alternatively, scripts exist to execute chunks of each processing pipeline, and individual commands may be run to execute a single processing step. To explore all the options in running trac-all please refer to the trac-all wiki. In order to use this script to reconstruct tracts in Diffusion images, all the subjects in the dataset must have Freesurfer Recons. | tractography, white matter tract, white matter pathway, diffusion weighted image, diffusion magnetic resonance imaging, white matter, brain, reconstruct, diffusion tensor imaging |
is related to: FreeSurfer has parent organization: Harvard Medical School; Massachusetts; USA |
Aging | NIH Blueprint for Neuroscience Research ; Ellison Medical Foundation ; NIBIB EB008129; NIMH U01-MH093765; NCRR P41-RR14075; NCRR U24-RR021382; NIBIB R01-EB006758; NIA R01-AG022381; National Center for Complementary and Alternative Medicine RC1-AT005728; NINDS R01-NS052585; NINDS R21-NS072652; NINDS R01-NS070963 |
PMID:22016733 | nlx_143919 | SCR_013152 | TRACULA - TRActs Constrained by UnderLying Anatomy, TRACULA: TRActs Constrained by UnderLying Anatomy, TRActs Constrained by UnderLying Anatomy | 2026-02-16 09:48:17 | 17 | |||||
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CAWorks Resource Report Resource Website 1+ mentions |
CAWorks (RRID:SCR_014185) | data processing software, software application, software resource, image analysis software | A software application developed to support computational anatomy and shape analysis. The capabilities of CAWorks include: interactive landmark placement to create segmentation (mask) of desired region of interest; specialized landmark placement plugins for subcortical structures such as hippocampus and amygdala; support for multiple Medical Imaging data formats, such as Nifti, Analyze, Freesurfer, DICOM and landmark data; Quadra Planar view visualization; and shape analysis plugin modules, such as Large Deformation Diffeomorphic Metric Mapping (LDDMM). Specific plugins are available for landmark placement of the hippocampus, amygdala and entorhinal cortex regions, as well as a browser plugin module for the Extensible Neuroimaging Archive Toolkit. | image analysis software, computational anatomy, shape analysis, plugin, subcortex, landmark placement |
is used by: Northwestern University Schizophrenia Data and Software Tool (NUSDAST) is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Johns Hopkins University; Maryland; USA |
NIMH 1R01 MH084803; NIBIB R01 EB008171; NIA 5U01AG033655; NCRR P41 RR015241; NIBIB R01 EB000975 |
Available to the research community | http://www.cis.jhu.edu/software/caworks/ | SCR_014185 | Computational Anatomy Works | 2026-02-16 09:48:32 | 1 |
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