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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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TREELD Resource Report Resource Website |
TREELD (RRID:SCR_009111) | TREELD | software application, software resource | Free software tool for mapping complex trait loci. TreeLD performs a multipoint LD-analysis by inferring the ancestry of a genomic region and analyzing this ancestry for signals of disease mutations. The generated likelihoods can be used to test for the presence of a disease locus and to fine-map its location, providing a point estimate and a credible region. Furthermore, the package provides a novel way of visualizing the association signal in a sample. TreeLD is designed for high-density SNP haplotypes and can be applied to case-control data, TDT trio data and quantitative trait data. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, solaris, linux, ms-windows, (95/98/nt/2000/xp) | is listed by: Genetic Analysis Software | Free | nlx_154210 | SCR_009111 | 2026-02-15 09:19:57 | 0 | ||||||||
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MIXSCORE Resource Report Resource Website 1+ mentions |
MIXSCORE (RRID:SCR_009076) | MIXSCORE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application using a method for combining SNP association and admixture association statistics to increase power in GWAS in admixed populations. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154074 | SCR_009076 | 2026-02-15 09:19:37 | 6 | ||||||||
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POWQ Resource Report Resource Website |
POWQ (RRID:SCR_009077) | POWQ | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023. A user-friendly, graphical package for power evaluation and enhancement planning through variance component linkage analysis in a multipoint framework. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:16585065 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154075 | SCR_009077 | 2026-02-15 09:20:02 | 0 | |||||||
|
STRAT Resource Report Resource Website 10+ mentions |
STRAT (RRID:SCR_009110) | STRAT | software application, software resource | Software application that is a companion program to STRUCTURE that is a structured association method, for use in association mapping, enabling valid case-control studies even in the presence of population structure. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos, ms-windows, unix, solaris, linux |
is listed by: Genetic Analysis Software is related to: STRUCTURE is related to: STRUCTURE |
nlx_154208 | SCR_009110 | 2026-02-15 09:20:04 | 12 | |||||||||
|
HAPLOVISUAL Resource Report Resource Website |
HAPLOVISUAL (RRID:SCR_009073) | HAPLOVISUAL | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154068 | SCR_009073 | 2026-02-15 09:20:02 | 0 | |||||||||
|
FAMHAP Resource Report Resource Website 10+ mentions |
FAMHAP (RRID:SCR_009070) | FAMHAP | software application, software resource | Software application for haplotype association analysis of unphased genotype data. It can be used both for population data (case-control) and nuclear family data. The program is optimized for haplotype frequency estimation with the EM-algorithm for many markers. FAMHAP provides a method which searches for potential genotyping errors and several tests for haplotype-based association analysis. Particular emphasis is on Monte-Carlo simulations, which are necessary in the context of haplotype association, where asymptotic theory often fails, and in the context of multiple testing problems. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154064 | SCR_009070 | 2026-02-15 09:20:03 | 12 | |||||||||
|
BAMA Resource Report Resource Website 50+ mentions |
BAMA (RRID:SCR_009071) | BAMA | software application, software resource | Software application to select a trait-associated subset of markers among many candidates. The program is based on Bayesian modeling/estimation and it suits for both quantitative and qualitative traits. It can handle bi- and multiallelic markers as well as applied in situations where part of the marker genotypes may be missing. As an output of the program, one obtains posterior estimate of number and positions of trait-associated markers. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, c, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154065 | SCR_009071 | Bayesian Analysis of Multilocus Association | 2026-02-15 09:19:57 | 98 | |||||||
|
HARDY Resource Report Resource Website 5000+ mentions |
HARDY (RRID:SCR_009107) | HARDY | software application, software resource | Markov chain Monte Carlo program for association in two-dimensional contingency tables, and for testing Hardy-Weinberg equilibrium. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (dec-unix/..) | is listed by: Genetic Analysis Software | nlx_154205 | SCR_009107 | PANGAEA | 2026-02-15 09:20:03 | 7329 | ||||||||
|
PBAT Resource Report Resource Website 50+ mentions |
PBAT (RRID:SCR_009105) | PBAT | software application, software resource | An interactive software package that provides tools for the design and the data analysis of family-based association studies. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154203 | SCR_009105 | Power calculation of family-Based Association Tests FBAT | 2026-02-15 09:19:38 | 75 | ||||||||
|
HELIXTREE Resource Report Resource Website 10+ mentions |
HELIXTREE (RRID:SCR_009067) | HELIXTREE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. | gene, genetic, genomic, c++, ms-windows, linux, macos x | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154059 | http://www.goldenhelix.com/SNP_Variation/HelixTree | SCR_009067 | HelixTree Genetic Association Software | 2026-02-15 09:19:56 | 24 | ||||||
|
FINESSE Resource Report Resource Website |
FINESSE (RRID:SCR_009100) | FINESSE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application to incorporate regressive models into the VITESSE likelihood engine. | gene, genetic, genomic, linux, unix, solaris | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154193 | SCR_009100 | VITESSE | 2026-02-15 09:20:04 | 0 | |||||||
|
SVCC Resource Report Resource Website 1+ mentions |
SVCC (RRID:SCR_009068) | SVCC | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. | gene, genetic, genomic, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154060 | http://www.bios.unc.edu/~lin/software/SVCC/ | SCR_009068 | Semiparametric Variance-Component for Censored data | 2026-02-15 09:19:37 | 3 | ||||||
|
GENECLASS Resource Report Resource Website 50+ mentions |
GENECLASS (RRID:SCR_009065) | GENECLASS | software application, software resource | Software application employing multilocus genotypes to select or exclude populations as origins of individuals (Assignment and Migrants Detection). (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, ms-windos, unix | is listed by: Genetic Analysis Software | nlx_154053 | SCR_009065 | 2026-02-15 09:20:02 | 86 | |||||||||
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CHIP2SPELL Resource Report Resource Website 1+ mentions |
CHIP2SPELL (RRID:SCR_009060) | CHIP2SPELL | software application, software resource | Software application that aims to speed up the preparation of linkage data files passed on to the Alohomora software for data from the Affymetrix or Illumina assays. Chip2Spell gathers the information necessary to supplement the genotype data (such as the genetic map of the markers and the population-specific allele frequencies) from publicly available annoation files from Affymetrix and Illumina. The program formats the genotype data for input into the Alohomora program. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154045 | SCR_009060 | 2026-02-15 09:19:37 | 1 | |||||||||
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BOOSTRAPPER Resource Report Resource Website 1+ mentions |
BOOSTRAPPER (RRID:SCR_009135) | BOOSTRAPPER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Robust haploblock border reliability estimation tool implemented for LD based haploblock detection method. The most important new features are bootstrapping and overlapping block borders. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154250 | SCR_009135 | 2026-02-15 09:19:57 | 2 | ||||||||
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BOOLD Resource Report Resource Website |
BOOLD (RRID:SCR_009134) | BOOLD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. A set of programs for calculations under different linkage disequilibrium (LD) distribution models (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, fortran 77, perl, unix, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154248 | SCR_009134 | 2026-02-15 09:20:04 | 0 | ||||||||
|
BIOLAD-DB Resource Report Resource Website 1+ mentions |
BIOLAD-DB (RRID:SCR_009131) | BIOLAD-DB | software application, software resource | Software application that is a research bioinformatics system for inputting, validating, organizing, archiving, analyzing, and processing of complex clinical and genetic data. The database schema employs design principles for handling complex clinical information, such as response items in genetic questionnaires. Data access and validation is provided by the BiolAD-DB client application, which features a data validation engine tightly coupled to a graphical user interface. Data integrity is provided by the password protected BiolAD-DB SQL compliant server database. BiolAD-DB tools further provide functionalities for generating customized reports and views. (entry from Genetic Analysis Software) | gene, genetic, genomic, python, ms-windows | is listed by: Genetic Analysis Software | nlx_154244 | SCR_009131 | 2026-02-15 09:19:57 | 1 | |||||||||
|
BIOIDE Resource Report Resource Website |
BIOIDE (RRID:SCR_009130) | BIOIDE | software application, software resource | Collection of data analysis tools and interrelated biomedical information in a single easy-to-use software package that includes a component-based software/data integration platform that can quickly transform fragmented enterprise legacy data and software into an integrated suite of tools and knowledge base to achieve maximal usability, interoperability, scalability, and extensibility. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154243 | SCR_009130 | BIOmedical Integrated Discovery Environment | 2026-02-15 09:20:04 | 0 | |||||||
|
HAPLOWSER Resource Report Resource Website |
HAPLOWSER (RRID:SCR_009095) | HAPLOWSER | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154113 | SCR_009095 | HAPLotype brOWSER | 2026-02-15 09:20:04 | 0 | ||||||||
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MOSCPHASER Resource Report Resource Website |
MOSCPHASER (RRID:SCR_009092) | MOSCPHASER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software application for inferring haplotypes composed of both CNV alleles and SNP alleles. | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools |
PMID:18492685 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154109, biotools:mocsphaser | https://bio.tools/mocsphaser | http://emu.src.riken.jp/MOCSphase/MOSCphaser.zip | SCR_009092 | Mixture Of Cnv-Snp PHASER | 2026-02-15 09:19:57 | 0 |
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