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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SEAL Resource Report Resource Website 100+ mentions |
SEAL (RRID:SCR_010914) | SEAL | software resource | A suite of distributed software applications for aligning short DNA reads, and manipulating and analyzing short read alignments. | mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:21697132 | biotools:seal, OMICS_00682 | https://bio.tools/seal | SCR_010914 | 2026-02-14 02:01:51 | 121 | |||||||
|
DIME Resource Report Resource Website 10+ mentions |
DIME (RRID:SCR_010874) | DIME | software resource | R-package for identifying differential ChIP-seq based on an ensemble of mixture models. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
biotools:DIME, OMICS_00473 | https://bio.tools/DIME | SCR_010874 | 2026-02-14 02:02:05 | 29 | ||||||||
|
CloudBurst Resource Report Resource Website |
CloudBurst (RRID:SCR_010911) | CloudBurst | software resource | A new parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics. | mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:19357099 | Free | OMICS_00657, biotools:cloudburst | https://bio.tools/cloudburst | SCR_010911 | 2026-02-14 02:02:06 | 0 | ||||||
|
SNPedia Resource Report Resource Website 50+ mentions |
SNPedia (RRID:SCR_006125) | SNPedia | data or information resource, database | Wiki investigating human genetics including information about the effects of variations in DNA, citing peer-reviewed scientific publications. It is used by Promethease to analyze and help explain your DNA. It is based on a wiki model in order to foster communication about genetic variation and to allow interested community members to help it evolve to become ever more relevant. As the cost of genotyping (and especially of fully determining your own genomic sequence) continues to drop, we''''ll all want to know more - a lot more - about the meaning of these DNA variations and SNPedia will be here to help. SNPedia has been launched to help realize the potential of the Human Genome Project to connect to our daily lives and well-being. For more information see the Wikipedia page, http://en.wikipedia.org/wiki/SNPedia * Download URL: http://www.SNPedia.com/index.php/Bulk * Web Service URL: http://bots.SNPedia.com/api.php | dna, genetics, gene, genome, genoset, genotype, medicine, medical condition, genetic variation, dna, genetic variation, genomics, single nucleotide polymorphism, medical association, phenotypic association, genealogical association, variation, genome annotation, phenotype, web service, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools |
PMID:22140107 | Creative Commons Attribution-NonCommercial-ShareAlike License, v3 | biotools:snpedia, grid.465250.0, nlx_151604 | https://ror.org/0253rdk33 https://bio.tools/snpedia |
SCR_006125 | 2026-02-14 02:05:59 | 62 | ||||||
|
RNA CoSSMos Resource Report Resource Website 1+ mentions |
RNA CoSSMos (RRID:SCR_006120) | RNA CoSSMos | data or information resource, database | Database to search through the nucleic acid structures from the Protein Data Bank and examine structural motifs, including (a)symmetric internal loops, bulge loops, and hairpin loops. They have compiled over 2,000 three-dimensional structures, which can now be searched using different parameters, including PDB information, experimental technique, sequence, and motif type. RNA secondary structure is important for designing therapeutics, understanding protein-RNA binding and predicting tertiary structure of RNA. Several databases and downloadable programs exist that specialize in the three-dimensional (3D) structure of RNA, but none focus specifically on secondary structural motifs such as internal, bulge and hairpin loops. To create the RNA CoSSMos database, 2156 Protein Data Bank (PDB) files were searched for internal, bulge and hairpin loops, and each loop''''s structural information, including sugar pucker, glycosidic linkage, hydrogen bonding patterns and stacking interactions, was included in the database. False positives were defined, identified and reclassified or omitted from the database to ensure the most accurate results possible. Users can search via general PDB information, experimental parameters, sequence and specific motif and by specific structural parameters in the subquery page after the initial search. Returned results for each search can be viewed individually or a complete set can be downloaded into a spreadsheet to allow for easy comparison. The RNA CoSSMos database is updated weekly. | secondary structure motif, rna, three-dimensional structure, internal loop, bulge loop, hairpin loop, motif, nucleic acid, structure, secondary structure, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: Saint Louis University; Missouri; USA |
NIGMS 1R15GM085699-01A1 | PMID:22127861 | Freely accessible, Acknowledgement requested | nlx_151597, biotools:rna_cossmos | https://bio.tools/rna_cossmos | SCR_006120 | Znosko Lab RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database, Znosko Lab CoSSMos Database, RNA Characterization of Secondary Structure Motifs (RNA CoSSMos), RNA CoSSMos Database, RNA CoSSMos - Characterization of Secondary Structure Motifs, RNA Characterization of Secondary Structure Motifs | 2026-02-14 02:06:25 | 1 | ||||
|
ProPortal Resource Report Resource Website 1+ mentions |
ProPortal (RRID:SCR_006112) | ProPortal | data or information resource, database | ProPortal is a database containing genomic, metagenomic, transcriptomic and field data for the marine cyanobacterium Prochlorococcus. Our goal is to provide a source of cross-referenced data across multiple scales of biological organization--from the genome to the ecosystem--embracing the full diversity of ecotypic variation within this microbial taxon, its sister group, Synechococcus and phage that infect them. The site currently contains the genomes of 13 Prochlorococcus strains, 11 Synechococcus strains and 28 cyanophage strains that infect one or both groups. Cyanobacterial and cyanophage genes are clustered into orthologous groups that can be accessed by keyword search or through a genome browser. Users can also identify orthologous gene clusters shared by cyanobacterial and cyanophage genomes. Gene expression data for Prochlorococcus ecotypes MED4 and MIT9313 allow users to identify genes that are up or downregulated in response to environmental stressors. In addition, the transcriptome in synchronized cells grown on a 24-h light-dark cycle reveals the choreography of gene expression in cells in a ''natural'' state. Metagenomic sequences from the Global Ocean Survey from Prochlorococcus, Synechococcus and phage genomes are archived so users can examine the differences between populations from diverse habitats. Finally, an example of cyanobacterial population data from the field is included. | genomic, metagenomic, transcriptomic, field data, marine cyanobacterium, genome, ecosystem, ecotypic variation, microbial taxon, phage, genome, gene, orthologous gene cluster, cyanobacteria, cyanophage genome, population dynamics, microarray, metagenome, protein, cyanophage, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
NSF OCE-0425602; NSF EF0424599; DOE DE-FG02-02ER63445; DOE DE-FG02-08ER64516; DOE DE-FG02-07ER64506; Gordon and Betty Moore Foundation award letter 495.01 |
PMID:22102570 | Public | nlx_151586, biotools:proportal | https://bio.tools/proportal | SCR_006112 | Prochlorococcus Portal | 2026-02-14 02:06:25 | 9 | ||||
|
CAPS Database Resource Report Resource Website 1+ mentions |
CAPS Database (RRID:SCR_006862) | CAPS-DB | data or information resource, database | It is a structural classification of helix-cappings or caps compiled from protein structures. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps. CASP-DB is fully browsable and searchable and is regularly updated. The regions of the polypeptide chain immediately preceding or following a helix are known as Nt- and Ct cappings, respectively. Cappings play a central role stabilizing helices due to lack of intrahelical hydrogen bonds in the first and last turn. Sequence patterns of amino acid type preferences have been derived for cappings but the structural motifs associated to them are still unclassified. CAPS-DB is a database of clusters of structural patterns of different capping types. The clustering algorithm is based in the geometry and the space conformation of these regions. CAPS-DB is a relational database that allows the user to search, browse, inspect and retrieve structural data associated to cappings. The contents of CAPS-DB might be of interest to a wide range of scientist covering different areas such as protein design and engineering, structural biology and bioinformatics. CapsDB v4.0 * PDB structures: 4591 * Number of clusters: 859 * Number of caps: 31452 | structural classification, helix-capping, protein engineering, clustering, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: Aberystwyth University; Wales; United Kingdom |
Research Councils United Kingdom Academic Fellow scheme ; Leeds Institute of Molecular Medicine ; MICINN and FEDER BIO2011-22568 |
PMID:22021380 | biotools:caps-db, nlx_149414 | http://www.bioinsilico.org/CAPSDB https://bio.tools/caps-db |
SCR_006862 | CAPS - Database | 2026-02-14 02:06:27 | 2 | |||||
|
SCOP: Structural Classification of Proteins Resource Report Resource Website 50+ mentions |
SCOP: Structural Classification of Proteins (RRID:SCR_007039) | data or information resource, database | The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. Protein domains in SCOP are hierarchically classified into families, superfamilies, folds and classes. The continual accumulation of sequence and structural data allows more rigorous analysis and provides important information for understanding the protein world and its evolutionary repertoire. SCOP participates in a project that aims to rationalize and integrate the data on proteins held in several sequence and structure databases. As part of this project, starting with release 1.63, we have initiated a refinement of the SCOP classification, which introduces a number of changes mostly at the levels below superfamily. The pending SCOP reclassification will be carried out gradually through a number of future releases. In addition to the expanded set of static links to external resources, available at the level of domain entries, we have started modernization of the interface capabilities of SCOP allowing more dynamic links with other databases. | bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools is related to: IndelFR - Indel Flanking Region Database is related to: SUPFAM is related to: DOMMINO - Database Of MacroMolecular INteractiOns has parent organization: MRC Laboratory of Molecular Biology |
PMID:14681400 | nlx_94704, biotools:scop | https://bio.tools/scop | SCR_007039 | Structural Classification of Proteins database, SCOP database | 2026-02-14 02:06:02 | 98 | |||||||
|
MyHits Resource Report Resource Website 10+ mentions |
MyHits (RRID:SCR_006757) | data or information resource, database | Database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them. | protein, domain, motif, sequence, predictor, markov, model, gene, expression, mysql, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools has parent organization: SIB Swiss Institute of Bioinformatics |
PMID:17545200 | Free | nif-0000-02962, biotools:myhits | https://bio.tools/myhits | SCR_006757 | MyHit | 2026-02-14 02:06:34 | 39 | ||||||
|
CuticleDB Resource Report Resource Website 10+ mentions |
CuticleDB (RRID:SCR_007045) | cuticleDB | data or information resource, database | A relational database containing all structural proteins of Arthropod cuticle identified to date. Many come from direct sequencing of proteins isolated from cuticle and from sequences from cDNAs that share common features with these authentic cuticular proteins. It also includes proteins from the five sequenced genomes where manual annotation has been applied to cuticular proteins: Anopheles gambiae, Apis mellifera, Bombyx mori, Drosophila melanogaster, and Nasonia vitripennis. Some sequences were confirmed as authentic cuticular proteins because protein sequencing revealed that they were present in cuticle; others were identified by sequence homology and other criteria. Entries provides information about whether sequences are putative or authentic cuticular proteins. CuticleDB was primarily designed to contain correct and full annotation of cuticular protein data. The database will be of help to future genome annotators. Users will be able to test hypotheses for the existence of known and also of yet unknown motifs in cuticular proteins. An analysis of motifs may contribute to understanding how proteins contribute to the physical properties of cuticle as well as to the precise nature of their interaction with chitin. | genome, cuticle, cuticle protein, cuticular protein, cdna, protein, insect, exoskeleton, annotation, chitin, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: University of Athens Biophysics and Bioinformatics Laboratory |
University of Athens; Athens; Greece ; NIAID AI055624 |
PMID:15453918 | biotools:cuticledb, nif-0000-02708 | https://bio.tools/cuticledb | SCR_007045 | CuticleDB - A relational database of Arthropod cuticular proteins | 2026-02-14 02:05:57 | 12 | |||||
|
DisProt - Database of Protein Disorder Resource Report Resource Website 100+ mentions |
DisProt - Database of Protein Disorder (RRID:SCR_007097) | data or information resource, database | The Database of Protein Disorder (DisProt) is a curated database that provides information about proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part. Users can BLAST sequences, browse by protein name, or view by protein function and functional subclass. | protein, protein structure, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: Temple University; Pennsylvania; USA |
nif-0000-02754, r3d100010561, biotools:disprot | https://bio.tools/disprot https://doi.org/10.17616/R3NG75 |
http://divac.ist.temple.edu/disprot | SCR_007097 | DisProt | 2026-02-14 02:06:02 | 204 | |||||||
|
GBrowse Resource Report Resource Website 10+ mentions |
GBrowse (RRID:SCR_006829) | GBrowse | data or information resource, database | A database and interactive web site for manipulating and displaying annotations on genomes. Features include: detailed views of the genome; use of a variety of premade or personally made glyphs ; customizable order and appearance of tracks by administrators and end-users; search by annotation ID, name, or comment; support of third party annotation using GFF formats; DNA and GFF dumps; connectivity to different databases, including BioSQL and Chado; and a customizable plug-in architecture (e.g. run BLAST, find oligonucleotides, design primers, etc.). GBrowse is distributed as source code for Macintosh OS X, UNIX and Linux platforms, and as pre-packaged binaries for Windows machines. It can be installed using the standard Perl module build procedure, or automated using a network-based install script. In order to use the net installer, you will need to have Perl 5.8.6 or higher and the Apache web server installed. The wiki portion accepts data submissions. | genome, annotation, database, perl, virus, dna, protein, reference sequence, chromosome, visualization, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite is related to: WormBase is related to: FlyBase is related to: International HapMap Project has parent organization: Generic Model Organism Database Project has parent organization: Indiana University; Indiana; USA |
Howard Hughes Medical Institute ; NHGRI HG00739; NHGRI P41HG02223 |
PMID:19957275 PMID:18428797 PMID:12368253 PMID:21400697 PMID:20194461 PMID:19357095 DOI:10.1002/0471250953.bi0909s28 |
The community can contribute to this resource, Requires Perl 5.8.6 or higher and the Apache web server | OMICS_00910, biotools:gbrowse, nif-0000-30597 | http://gmod.org/wiki/GBrowse https://bio.tools/gbrowse https://sources.debian.org/src/gbrowse/ |
SCR_006829 | Generic Genome Browser | 2026-02-14 02:06:35 | 43 | ||||
|
SWISS-2DPAGE Resource Report Resource Website 1+ mentions |
SWISS-2DPAGE (RRID:SCR_006946) | data or information resource, database | A database of proteins identified by various 2-D PAGE and SDS-PAGE reference maps. Each SWISS-2DPAGE entry contains textual data on one protein, including mapping procedures, physiological and pathological information, experimental data (isoelectric point, molecular weight, amino acid composition, peptide masses) and bibliographical references. In addition to this textual data, SWISS-2DPAGE provides several 2-D PAGE and SDS-PAGE images showing the experimentally determined location of the protein, as well as a theoretical region computed from the sequence protein, indicating where the protein might be found in the gel. Using the database, users can locate these proteins on the 2-D PAGE maps or display the region of a 2-D PAGE map where one might expect to find a protein from UniProtKB/Swiss-Prot. | bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: SIB Swiss Institute of Bioinformatics has parent organization: University of Geneva; Geneva; Switzerland |
biotools:swiss-2dpage, nif-0000-03521 | https://bio.tools/swiss-2dpage | SCR_006946 | SWISS-2DPAGE | 2026-02-14 02:05:57 | 3 | ||||||||
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AgBase Resource Report Resource Website 100+ mentions |
AgBase (RRID:SCR_007547) | AgBase | data or information resource, database | A curated, open-source, web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. AgBase provides tools designed to assist with the analysis of proteomics data and tools to evaluate experimental datasets using the GO. Additional tools for sequence analysis are also provided. We use controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species. AgBase will also accept annotations from any interested party in the research communities. AgBase develops freely available tools for functional analysis, including tools for using GO. We appreciate any and all questions, comments, and suggestions. AgBase uses the NCBI Blast program for searches for similar sequences. And the Taxonomy Browser allows users to find the NCBI defined taxon ID for or taxon name for different organisms. | gene ontology, agricultural species, biological process, cellular component for genes, molecular function, protein identification, animals, plants, microbes, parasites, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools is related to: IntAct has parent organization: Mississippi State University; Mississippi; USA is parent organization of: GORetriever is parent organization of: GOSlimViewer is parent organization of: GOProfiler is parent organization of: GOanna |
Mississippi State University; Mississippi; USA ; USDA Agriculture and Food Research Initiative Competitive Grant 2011-67015-30332; National Research Initiative of the USDA Cooperative State Research Education and Extension Service 2007-35205-17941; NIGMS project 07111084; NSF EPS 0903787 |
PMID:21075795 | nif-0000-02537, biotools:agbase, r3d100012427 | https://bio.tools/agbase https://doi.org/10.17616/R3P772 |
SCR_007547 | 2026-02-14 02:05:59 | 111 | ||||||
|
HubMed Resource Report Resource Website 1+ mentions |
HubMed (RRID:SCR_007296) | data or information resource, database | HubMed provides an interface to PubMed. Quick access to searches with a Firefox search plugin or a HubMed bookmarklet (drag to your browser''s bookmarks toolbar). Export citations in RIS, BibTeX, RDF and MODS formats, or directly to RefWorks. Unzip HubMed''s import filter into Endnote''s Filters folder for direct import into Endnote, or install the RIS Export plugin for direct import into ProCite, RefMan and older versions of Endnote. Use the Citation Finder to convert reference lists from PDFs into search results. Create lists of closely related papers using Rank Relations, then visualise and browse clusters of related papers using TouchGraph (requires Java). Graph occurrences of keywords in published papers over time. Tag and store annotated metadata for articles of interest. | bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: National Center for Integrative Biomedical Informatics |
nif-0000-00111, biotools:hubmed | https://bio.tools/hubmed | SCR_007296 | HubMed | 2026-02-14 02:06:28 | 8 | ||||||||
|
COGEME Phytopathogenic Fungi and Oomycete EST Database Resource Report Resource Website 1+ mentions |
COGEME Phytopathogenic Fungi and Oomycete EST Database (RRID:SCR_007604) | data or information resource, database | COGEME is an ongoing BBSRC-funded study to construct a relational database of genomic information from phytopathogenic fungi. This site also hosts microarray data for Blumeria graminis. Expressed sequence tags (ESTs) obtained from eighteen species of plant pathogenic fungi, two species of phytopathogenic oomycete and three species of saprophytic fungi are included here. Hierarchical clustering software was used to classify together ESTs representing the same gene and produce a single contig, or consensus sequence. The unisequence set for each pathogen therefore represents a set of unique gene sequences, each one consisting of either a single EST or a contig sequence made from a group of ESTs. Unisequences were annotated based on top hits against the NCBI non-redundant protein database using blastx. | blumeria graminis, phytopathogen, phytopathogen est, phytopathogenic fungi, phytopathogenic oomycete, plant pathogenic fungi, saprophytic fungi, bio.tools |
is listed by: bio.tools is listed by: Debian |
nif-0000-02673, biotools:cogeme | https://bio.tools/cogeme | SCR_007604 | COGEME | 2026-02-14 02:06:00 | 5 | ||||||||
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CATH: Protein Structure Classification Resource Report Resource Website 100+ mentions |
CATH: Protein Structure Classification (RRID:SCR_007583) | data or information resource, database | CATH is a hierarchical classification of protein domain structures, which clusters proteins at four major levels: Class (C), Architecture (A), Topology (T) and Homologous superfamily (H). The boundaries and assignments for each protein domain are determined using a combination of automated and manual procedures which include computational techniques, empirical and statistical evidence, literature review and expert analysis Users can search CATH by ID/Sequence/text. They can also browse CATH from the top of the hierarchy, or download CATH data. | architecture, class, homologous superfamily, protein cluster, protein domain structure, topology, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian is related to: FunTree has parent organization: University College London; London; United Kingdom |
nif-0000-02640, r3d100012629, biotools:cath | https://bio.tools/cath https://doi.org/10.17616/R32Z1F |
SCR_007583 | CATH | 2026-02-14 02:06:04 | 291 | ||||||||
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Genome Reviews Resource Report Resource Website 1+ mentions |
Genome Reviews (RRID:SCR_007685) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented April 24, 2017. The Genome Reviews database provides an up-to-date, standardized and comprehensively annotated view of the genomic sequence of organisms with completely deciphered genomes. Currently, Genome Reviews contains the genomes of archaea, bacteria, bacteriophages and selected eukaryota. Genome Reviews is available as a MySQL relational database, or a flat file format derived from that in the EMBL Nucleotide Sequence Database. An Ensembl-style browser is now available for Genome Reviews, providing a zoomable graphical view of all chromosomes and plasmids represented in the database. The location and structure of all genes is shown and the distribution of features throughout the sequence is displayed. | complete genome sequence, genome sequence, nucleotides, gold standard, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: European Bioinformatics Institute |
European Union FELICS contract 021902 (RII3); European Union TEMBLOR contract QLRI- CT-2001000015 |
PMID:16901215 PMID:15608201 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02899, biotools:genomereviews | https://bio.tools/genomereviews | SCR_007685 | Genome Reviews Database | 2026-02-14 02:06:37 | 4 | |||||
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FireDB Resource Report Resource Website 1+ mentions |
FireDB (RRID:SCR_007655) | FireDB | data or information resource, database | A database of Protein Data Bank structures, ligands and annotated functional site residues. The database can be accessed by PDB codes or UniProt accession numbers as well as keywords. FireDB contains information on every chemical compound in the PDB, including their descriptions, the PDB structures in which the compounds are found and the amino acids that are in contact with the ligand. | protein, protein structure, pdb, bio.tools |
uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is listed by: bio.tools is listed by: Debian has parent organization: Spanish National Cancer Research Center |
nif-0000-02839, biotools:firedb | https://bio.tools/firedb | SCR_007655 | 2026-02-14 02:06:37 | 7 | ||||||||
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MfunGD - MIPS Mouse Functional Genome Database Resource Report Resource Website 50+ mentions |
MfunGD - MIPS Mouse Functional Genome Database (RRID:SCR_007783) | MfunGD | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16, 2019.Database for annotated mouse proteins and their occurrence in protein networks. It contains cDNA and protein sequences, annotation, gene models and mapping, FunCat, UCSC Genome Viewer, SIMAP, pseudogenes (Genome Viewer Track), InterPro, and splice variants. Protein function annotation is performed using the Functional Catalogue (FunCat) annotation scheme, which is a hierarchically structured classification system. To provide up-to-date similarity search results and InterPro domain analyses, the protein entries are interconnected with the SIMAP database. The gene models are based on the RefSeq mouse cDNAs. The work of our group is focussed on the annotation of biological systems. Therefore, results from the Mammalian Protein-Protein Interaction Database and the Comprehensive Resource of Mammalian Protein Complexes are linked to the MfunGD dataset. Links to external resources are also provided. MfunGD is implemented in GenRE, a J2EE based component oriented multi-tier architecture. | bio.tools |
is listed by: Debian is listed by: bio.tools |
GSF National Research Center for Environment and Health ; German Federal Ministry of Research and Education |
PMID:16381934 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03121, biotools:mfungd | https://bio.tools/mfungd | SCR_007783 | Mouse Functional Genome Database | 2026-02-14 02:06:08 | 89 |
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