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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PeakRanger Resource Report Resource Website 10+ mentions |
PeakRanger (RRID:SCR_010863) | PeakRanger | software resource | Software for a multi-purpose ChIP Seq peak caller. | mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:21554709 | OMICS_00451, biotools:peakranger | https://bio.tools/peakranger | SCR_010863 | 2026-02-14 02:02:06 | 21 | |||||||
|
RRBSMAP Resource Report Resource Website 1+ mentions |
RRBSMAP (RRID:SCR_010864) | RRBSMAP | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 18,2023. A specifically designed version of BSMAP for reduced representation bisulfite sequencing (RRBS). |
is listed by: OMICtools has parent organization: Google Code |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00589 | SCR_010864 | 2026-02-14 02:02:06 | 5 | |||||||||
|
SIPeS Resource Report Resource Website 1+ mentions |
SIPeS (RRID:SCR_010865) | SIPeS | software resource | An algorithm that allows researchers to identify transcript factor binding sites from paired-end sequencing reads. SIPeS uses a dynamic baseline directly through the piling up of fragments to effectively find peaks, overcoming the disadvantage of estimating the average length of DNA fragments from singled-end sequencing achieving more powerful prediction binding sites with high sensitivity and specificity. | is listed by: OMICtools | PMID:20144209 | Free to academic users, Non-commercial, Commercial requires permission | OMICS_00462 | SCR_010865 | SIPeS - Site Identification from Paired-end Sequencing, Site Identification from Paired-end Sequencing | 2026-02-14 02:01:50 | 5 | |||||||
|
T-PIC Resource Report Resource Website 1+ mentions |
T-PIC (RRID:SCR_010867) | T-PIC | software resource | A software for determining DNA/protein binding sites from a ChIP-Seq experiment. |
is listed by: OMICtools has parent organization: University of Miami; Florida; USA |
OMICS_00464 | SCR_010867 | 2026-02-14 02:02:06 | 7 | ||||||||||
|
ChIPDiff Library Comparison Resource Report Resource Website |
ChIPDiff Library Comparison (RRID:SCR_010871) | ChIPDiff Library Comparison | software resource | Provides a solution for the identification of Differential Histone Modification Sites (DHMSs) by comparing two ChIP-seq libraries (L1 and L2). | is listed by: OMICtools | OMICS_00469 | SCR_010871 | 2026-02-14 02:02:06 | 0 | ||||||||||
|
SEAL Resource Report Resource Website 100+ mentions |
SEAL (RRID:SCR_010914) | SEAL | software resource | A suite of distributed software applications for aligning short DNA reads, and manipulating and analyzing short read alignments. | mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:21697132 | biotools:seal, OMICS_00682 | https://bio.tools/seal | SCR_010914 | 2026-02-14 02:01:51 | 121 | |||||||
|
aCGHtool Resource Report Resource Website 1+ mentions |
aCGHtool (RRID:SCR_010915) | aCGHtool | software resource | A software tool for the normalization, visualization, breakpoint detection, and comparative analysis of array-CGH data which allows the accurate and sensitive detection of CNAs. | is listed by: OMICtools | OMICS_00699 | SCR_010915 | 2026-02-14 02:02:06 | 1 | ||||||||||
|
Agilent Genomic Workbench Resource Report Resource Website 100+ mentions |
Agilent Genomic Workbench (RRID:SCR_010918) | Agilent Genomic Workbench | software resource | A comprehensive design and analysis tool for setting up and interpreting your microarray experiments. | is listed by: OMICtools | OMICS_00702 | SCR_010918 | 2026-02-14 02:01:51 | 248 | ||||||||||
|
DBChIP Resource Report Resource Website 1+ mentions |
DBChIP (RRID:SCR_010872) | DBChIP | software resource | Detects differential binding of transcription factors with ChIP-seq. | is listed by: OMICtools | OMICS_00470 | SCR_010872 | 2026-02-14 02:02:06 | 5 | ||||||||||
|
DIME Resource Report Resource Website 10+ mentions |
DIME (RRID:SCR_010874) | DIME | software resource | R-package for identifying differential ChIP-seq based on an ensemble of mixture models. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
biotools:DIME, OMICS_00473 | https://bio.tools/DIME | SCR_010874 | 2026-02-14 02:02:05 | 29 | ||||||||
|
ChIPModule Resource Report Resource Website 1+ mentions |
ChIPModule (RRID:SCR_010877) | ChIPModule | software resource | A software tool for systematic discovery of transcription factors and their cofactors from ChIP-seq data. | is listed by: OMICtools | OMICS_00477 | SCR_010877 | ChIPModule: Systematic discovery of transcription factors and their cofactors from ChIP-seq data | 2026-02-14 02:01:51 | 1 | |||||||||
|
CloudBurst Resource Report Resource Website |
CloudBurst (RRID:SCR_010911) | CloudBurst | software resource | A new parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics. | mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:19357099 | Free | OMICS_00657, biotools:cloudburst | https://bio.tools/cloudburst | SCR_010911 | 2026-02-14 02:02:06 | 0 | ||||||
|
ERNE Resource Report Resource Website 10+ mentions |
ERNE (RRID:SCR_010912) | ERNE | software resource | A short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00662 | SCR_010912 | 2026-02-14 02:02:07 | 46 | ||||||||||
|
F-Seq Resource Report Resource Website 50+ mentions |
F-Seq (RRID:SCR_010880) | F-Seq | software resource | A software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser. |
is listed by: OMICtools has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
OMICS_00482 | SCR_010880 | 2026-02-14 02:02:06 | 83 | ||||||||||
|
Carleton University; Ontario; Canada Resource Report Resource Website |
Carleton University; Ontario; Canada (RRID:SCR_011136) | university | Public comprehensive university in Ottawa, Ontario, Canada. Founded in 1942 as Carleton College, a private, non-denominational evening college to serve returning World War II. |
is parent organization of: Aptamer Base is parent organization of: An Extended and Parallel version of Clustal is parent organization of: Carleton University Tissue Engineering and Applied Materials Hub Core Facility |
Crossref funder ID:100008095, grid.34428.39, Wikidata:Q1041737, nlx_45745, ISNI:0000 0004 1936 893X | https://ror.org/02qtvee93 | SCR_011136 | 2026-02-14 02:02:08 | 0 | ||||||||||
|
Aldevron Resource Report Resource Website 10+ mentions |
Aldevron (RRID:SCR_011017) | Aldevron | commercial organization | Contract manufacturing services company, specializing in plasmid DNA manufacturing, protein services and antibody development.Producesg high quality plasmid DNA, proteins, enzymes, antibodies, and other biologicals in support of clients objectives. | is listed by: ScienceExchange | SciEx_9447 | http://www.scienceexchange.com/facilities/aldevron | SCR_011017 | 2026-02-14 02:02:07 | 46 | |||||||||
|
Medical Research Council Resource Report Resource Website 10+ mentions |
Medical Research Council (RRID:SCR_011018) | MRC, UK MRC | institution | The Medical Research Council is a publicly-funded organization dedicated to improving human health. We support research across the entire spectrum of medical sciences, in universities and hospitals, in our own units, centers and institutes in the UK, and in our units in Africa. | is related to: EMIF | Wikidata: Q746879, Crossref funder ID: 501100000265, nlx_inv_1005080, ISNI: 122478951, grid.14105.31 | https://ror.org/03x94j517 | SCR_011018 | UK Medical Research Council, British Medical Research Council | 2026-02-14 02:02:10 | 18 | ||||||||
|
Catholic University of Louvain; Louvain-la-Neuve; Belgium Resource Report Resource Website |
Catholic University of Louvain; Louvain-la-Neuve; Belgium (RRID:SCR_011141) | UCL | university | Belgium's largest French speaking university. |
is related to: Pharma-Planta Consortium is related to: PRECISESADS is parent organization of: Catholic University of Louvain Institute of Experimental and Clinical Research Imaging Platform Core Facility is parent organization of: Catholic University of Louvain Institute of Experimental and Clinical Research Flow Cytomerty Platform Core Facility is parent organization of: Catholic University of Louvain Genomics platform Core Facility |
grid.7942.8, Wikidata:Q378134, ISNI:0000 0001 2294 713X, nlx_143960, Crossref funder ID:501100008135 | https://ror.org/02495e989 | http://www.uclouvain.be/en-index.html | SCR_011141 | Catholic University of Louvain, Universit� catholique de Louvain, Universite catholique de Louvain | 2026-02-14 02:02:12 | 0 | |||||||
|
Mouse Clinical Institute; Alsace; France Resource Report Resource Website 10+ mentions |
Mouse Clinical Institute; Alsace; France (RRID:SCR_011021) | MCI, ICS | institution | Research infrastructure for generation of new mouse models,being therefore the most important transgenic mouse production unit in France. | is related to: AgedBrainSYSBIO | nlx_158126, ISNI: 0000 0004 0404 8159, grid.452426.3 | https://ror.org/03cjqqq10 | SCR_011021 | Mouse Clinical Institute, Institut Clinique de la Souris, Institut Clinique de la Souris; Alsace; France | 2026-02-14 02:02:09 | 10 | ||||||||
|
Cayetano Heredia University; Lima; Peru Resource Report Resource Website 10+ mentions |
Cayetano Heredia University; Lima; Peru (RRID:SCR_011142) | university | Private nonprofit university located in Lima, Peru. It was named in honor of Cayetano Heredia, one of the eminent Peruvian physicians of the 19th century. The university is overseen by a board of trustees and is not owned by any private or state entity. | is parent organization of: CELL- PREVEN Project | nlx_71545 | http://www.upch.edu.pe/ | SCR_011142 | UPCH | 2026-02-14 02:01:54 | 33 |
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