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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Robotic Flower System for Bee Behavior project Resource Report Resource Website |
Robotic Flower System for Bee Behavior project (RRID:SCR_021584) | data or information resource, project portal, portal, instrument resource | Portal provides system of robotic artificial flowers to study bumble bee behavior. System is designed to capture data when animal is feeding by placement of IR beams that are broken when engaged on flowers feeding mechanism and sends data to control unit.Developed by University of Oulu in Finland scientists. System includes control unit, separate artificial flowers, and personal computer. Control unit is to handle electronics of flowers, collect data from them, and to send data to computer. Flowers contain infrared sensor, their associated electronics, and electromechanical device that offers small, precise amount of sugar solution from reservoir. Computer runs software that controls refilling rate and data collection via the control unit. Circuit diagrams, parts list, and control software and source code are available in paper supplemental information. | Robotic artificial flowers, study bumble bee behavior, animal feeding data, flowers feeding mechanism, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1002/ece3.2062 | Free, Freely available | SCR_021584 | Robotic Flower System for Bee Behavior | 2026-02-17 10:03:51 | 0 | ||||||||
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Homecage Task Training and Mesoscale Imaging project Resource Report Resource Website |
Homecage Task Training and Mesoscale Imaging project (RRID:SCR_021580) | data or information resource, project portal, portal, instrument resource | Project to build and use new generation of home cages with emphasis on training for simple headfixed tasks during simultaneous autonomous acquisition of mesoscale brain imaging data. Homecage platform for automated task training and mesoscale brain imaging for mice developed by University of British Columbia scientists. | Instrument, automated task training, mesoscale brain imaging, mice, OpenBehavior |
is listed by: OpenBehavior is related to: AutoHeadFix has parent organization: University of British Columbia; British Columbia; Canada |
DOI:10.7554/elife.55964 | Free, Freely available | SCR_021580 | Homecage Task Training and Mesoscale Imaging | 2026-02-17 10:03:26 | 0 | ||||||||
|
OpenMV project Resource Report Resource Website |
OpenMV project (RRID:SCR_021579) | data or information resource, project portal, portal, instrument resource | Portal provides system capable of frame differencing, color tracking, marker tracking, face detection, eye tracking, person detection (with TensorFlow Lite), and more. Supports very easy to use GUI, the OpenMV IDE. | Instrument, frame differencing, color tracking, marker tracking, face detection, eye tracking, person detection, OpenBehavior |
is listed by: OpenBehavior is related to: OpenMV |
Free, Freely available | SCR_021579 | OpenMV system | 2026-02-17 10:04:07 | 0 | |||||||||
|
Tetroplater Resource Report Resource Website |
Tetroplater (RRID:SCR_021578) | data or information resource, project portal, portal, instrument resource | Portal provides open source circuit for microwire tetrode gold plating. Circuit includes impedance meter and current generator for tetrode gold plating. Developed by University of Toyama scientist. | Instrument, neuronal activity, recording neuronal activity, microwire tetrode gold plating, OpenBehavior | is listed by: OpenBehavior | DOI:10.3791/1098 | Free, Freely available | SCR_021578 | 2026-02-17 10:03:51 | 0 | |||||||||
|
OpenSpritzer Resource Report Resource Website |
OpenSpritzer (RRID:SCR_021575) | data or information resource, project portal, portal, instrument resource | Portal provides open hardware used in labs for administering picoliters of liquid to biological samples. Pressure ejection system developed by University of Sussex scientist for reliably delivering picolitre volumes. | Instrument, administering picoliters of liquid, pressure ejection system, delivering picolitre volumes, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Sussex; Brighton; United Kingdom |
DOI:10.1038/s41598-017-02301-2 | Free, Freely available | SCR_021575 | 2026-02-17 10:04:07 | 0 | |||||||||
|
Pulse Pal project Resource Report Resource Website |
Pulse Pal project (RRID:SCR_021576) | data or information resource, project portal, portal, instrument resource | Portal provides open source, low cost, programmable pulse train generator for physiology and behavior. Device allows users to create and trigger software defined trains of voltage pulses with high temporal precision. Arduino powered device that generates precise sequences of voltage pulses for neural stimulation and stimulus control. Controlled either through its APIs in MATLAB, Python and C plus plus, or as stand-alone instrument using its oLED screen and clickable thumb joystick. | Instrument, pulse train generator, Arduino powered device, neural stimulation, stimulus control, OpenBehavior |
is listed by: OpenBehavior is related to: Pulse Pal |
Free, Freely available | SCR_021576 | Pulse Pal system, Pulse Pal generator | 2026-02-17 10:03:25 | 0 | |||||||||
|
MouseMove Resource Report Resource Website |
MouseMove (RRID:SCR_021618) | data analysis software, software application, data processing software, software resource | Open source program for semi automated analysis of movement and cognitive testing in rodents. Accurately quantifies numerous parameters of movement including travel distance, speed, turning, stationary fraction and laterality. Part of MouseMove system. | Semi automated analysis, movement analysis, movement parameters quantification, OpenBehavior |
is listed by: OpenBehavior is related to: MouseMove project |
DOI:10.1038/srep16171 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/mousemove/ | SCR_021618 | 2026-02-17 10:04:03 | 0 | ||||||||
|
TRIO Platform Resource Report Resource Website |
TRIO Platform (RRID:SCR_021596) | data or information resource, project portal, portal, instrument resource | Portal provides low profile in vivo imaging support and restraint system for mice. System is compact and provides sturdy head fixation, gas anesthesia mask, and warm water bed. Compact design allows to work with variety of microscope stages and use of 3D printed components makes this design customizable. | Instrument, mice neural function, imaging support, restraint system, fixation, gas anesthesia mask, warm water bed, OpenBehavior | is listed by: OpenBehavior | DOI:10.3389/fnins.2016.00169 | Free, Freely available | SCR_021596 | Three-In-One Platform | 2026-02-17 10:03:51 | 0 | ||||||||
|
Visual Discrimination with an iPad Resource Report Resource Website |
Visual Discrimination with an iPad (RRID:SCR_021593) | data or information resource, project portal, portal, instrument resource | Portal provides touchscreen platform developed by Texas Christian University scientists. iPad apparatus set up consists of four wall operant chamber, remote desktop program, Visual Basic 6 software, and single wireless iPad. Wireless iPad allows for flexibility in setups during performing visual discrimination behavioral experiments. | Instrument, iPad apparatus, four wall operant chamber, remote desktop program, Visual Basic 6 software, wireless iPad, visual discrimination tasks, OpenBehavior |
is listed by: OpenBehavior has parent organization: Texas Christian University; Fort Worth; USA |
DOI:10.1016/j.beproc.2012.11.013 | Free, Freely available | http://www.drkennethleising.com/research/tbes/ | SCR_021593 | 2026-02-17 10:04:08 | 0 | ||||||||
|
CHEndoscope Resource Report Resource Website 1+ mentions |
CHEndoscope (RRID:SCR_021587) | data or information resource, project portal, portal, instrument resource | Portal provides open source Compact Head Mounted Endoscope for imaging in freely behaving mouse. Includes accessible and flexible set of calcium imaging tools for neuroscience research community. | Instrument, compact head mounted endoscope, imaging in awake behaving mouse, OpenBehavior. |
is listed by: OpenBehavior is related to: chendoscope |
DOI:10.1002/cpns.51 | Free, Freely available | SCR_021587 | Compact Head Mounted Endoscope | 2026-02-17 10:04:03 | 2 | ||||||||
|
Craniobot project Resource Report Resource Website |
Craniobot project (RRID:SCR_021573) | data or information resource, project portal, portal, instrument resource | Portal provides computer numerical controlled robot for cranial microsurgeries developed by University of Minnesota scientist. Included cranial microsurgery platform combines automated skull surface profiling with computer numerical controlled milling machine to perform variety of cranial microsurgical procedures on mice. | Instrument, removing skull sections, access brain, computer numerical controlled robot, cranial microsurgeries robot, OpenBehavior |
is listed by: OpenBehavior is related to: craniobot has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
DOI:10.1038/s41598-018-37073-w | Free, Freely available | SCR_021573 | Craniobot | 2026-02-17 10:04:02 | 0 | ||||||||
|
pyControl project Resource Report Resource Website |
pyControl project (RRID:SCR_021574) | data or information resource, project portal, portal, instrument resource | Portal provides system that combines open source hardware and software for control of behavioral experiments. Open source framework, combines Python scripts and Micropython microcontroller. Framework can be run through command line interface, or in user friendly graphical user interface that allows users to manage variety of devices such as nose pokes, LED drivers, stepper motor controllers and more. Data collected using this system can then be imported into Python for data analysis. | Instrument, Micropython microcontroller, Python scripts, behavioral experiment control, OpenBehavior |
is listed by: OpenBehavior is related to: pyControl |
Free, Freely available | SCR_021574 | pyControl system | 2026-02-17 10:03:51 | 0 | |||||||||
|
PhotometryBox Resource Report Resource Website |
PhotometryBox (RRID:SCR_021571) | data or information resource, project portal, portal, instrument resource | Portal provides open source control system for in vivo fluorescence measurements from deep brain structures developed by University of California, San Francisco scientists. Microcontroller based solution for controlling optical components in intracranial photometry system and processing resulting signal. | Instrument, fluorescence measurements, deep brain structures, optical fibers, intracranial photometry system, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of California at San Francisco; California; USA |
DOI:10.1016/j.jneumeth.2018.10.022 | Free, Freely available | SCR_021571 | 2026-02-17 10:04:07 | 0 | |||||||||
|
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project Resource Report Resource Website |
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project (RRID:SCR_021572) | HOPE | data or information resource, project portal, portal, instrument resource | Portal provides brain implant developed by MIT scientists. Implant carries 16 movable tetrodes along with two optic fibers or two injection cannulas. Designed with help of 3D CAD software, allowing modifications for various experimental needs, such as targeting different brain regions and use in other animal species (e.g., rats and non-human primates). Implant can be designed to shape of skull of individual monkeys based on pre-implantation magnetic resonance imaging, thus optimizing fit with skull surface and making recording from deep brain regions more reliable. | Instrument, neural implant, brain implant, manipulate neuronal activity, OpenBehavior |
is listed by: OpenBehavior is related to: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
DOI:10.3389/fncir.2018.00041 | Free, Freely available | SCR_021572 | Pharmacology, and Electrophysiology, Hybrid-drive combining Optogenetics, Hybrid drive combining Optogenetics | 2026-02-17 10:03:25 | 0 | |||||||
|
CerebraLux Resource Report Resource Website |
CerebraLux (RRID:SCR_021570) | data or information resource, project portal, portal, instrument resource | Portal provides low cost, open source, wireless probe for optogenetic stimulation. This wireless system for optogenetic stimulation was developed by UCLA scientists. Device consists of two parts. Optical component is mounted on head permanently, whereas electronic component is removable and is applied for each experiment. Device is controlled via custom GUI (built with the TkInter Python 2.7 library) which sends pulses to device via Arduino Uno. | Instrument, optogenetic stimulation, wireless system, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of California at Los Angeles; California; USA |
DOI:10.1117/1.nph.4.4.045001 | Free, Freely available | SCR_021570 | 2026-02-17 10:03:51 | 0 | |||||||||
|
Nose Poke Device Resource Report Resource Website |
Nose Poke Device (RRID:SCR_021568) | data or information resource, project portal, portal, instrument resource | Portal provides arduino based, 3D-printed nose poke device for rats. Includes set of instructions on how to build this device using arduino, some 3D printed parts and some off-the-shelf electronic components. | Instrument, nose poke device, device for rats, arduino, 3D printed parts, electronic components, OpenBehavior |
is listed by: OpenBehavior is related to: poke device arduino |
Free, Freely available | SCR_021568 | 2026-02-17 10:03:25 | 0 | ||||||||||
|
MRI-stereoscope project Resource Report Resource Website 1+ mentions |
MRI-stereoscope project (RRID:SCR_021655) | data or information resource, project portal, portal, instrument resource | Project provides miniature mirror stereoscope system for MRI-scanner. System takes advantage of commonly used display equipment, MRI head coil, and display screen. Miniature Wheatstone stereoscope is used for human neuroimaging. | Miniature Wheatstone stereoscope, human neuroimaging, stereoscope system, MRI-scanner, Istrument, OpenBehavior | is listed by: OpenBehavior | Free, Freely available | SCR_021655 | 2026-02-17 10:03:52 | 1 | ||||||||||
|
Ratcave Resource Report Resource Website |
Ratcave (RRID:SCR_021599) | software library, software resource, software toolkit | Software 3D graphics python package for cognitive psychology experiments. Open source, cross platform Python library that adds 3D stimulus support to all OpenGL-based 2D Python stimulus libraries. These libraries include VisionEgg, Psychopy, Pyglet, and PyGam. | Stimuli to subjects, response record, Python, 3D graphics library, 3D stimulus support, OpenBehavior |
is listed by: OpenBehavior is related to: Ratcave project |
DOI:10.3758/s13428-019-01245-x | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ratcave/ | SCR_021599 | 2026-02-17 10:04:08 | 0 | ||||||||
|
Argus Resource Report Resource Website 1+ mentions |
Argus (RRID:SCR_021585) | data or information resource, project portal, portal, software resource | Portal provides software tool for analysis and quantification of both single and socially interacting zebrafish. Software data extraction and analysis tool built in open source R language for tracking zebrafish behavior. | Analysis, quantification, socially interacting zebrafish, OpenBehavior |
is listed by: OpenBehavior is listed by: SoftCite is related to: Argus |
DOI:10.3758/s13428-018-1083-y | Free, Freely available | SCR_021619 | SCR_021585 | 2026-02-17 10:04:07 | 1 | ||||||||
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DeepFly3D Resource Report Resource Website |
DeepFly3D (RRID:SCR_021402) | image analysis software, software application, data processing software, software resource | Software tool as PyTorch and PyQT5 implementation of 2D-3D tethered Drosophila pose estimation. Image annotation tool used for pose estimation and appendage tracking. Provides interface for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose. | Image annotation, pose tracking, pose estimation, motor circuit, behavioral measure, accurate 3D pose estimation, OpenBehavior |
is listed by: OpenBehavior is related to: DeepFly3D project |
DOI:10.7554/elife.48571 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepfly3d/ | SCR_021402 | 2026-02-17 10:04:00 | 0 |
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