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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Vermont University Larner College of Medicine Microscopy Imaging Center Core Facility
 
Resource Report
Resource Website
50+ mentions
Vermont University Larner College of Medicine Microscopy Imaging Center Core Facility (RRID:SCR_018821) MIC service resource, core facility, access service resource Core provides imaging equipment including JEOL 1400 transmission electron microscope with AMT 11 megapixel digital camera,JEOL JSM 6060 scanning electron microscope with attached Oxford INCA energy dispersive spectroscopy detector for element analysis,Nikon Air HD confocal scanning laser microscope, Nikon C2 confocal scanning laser microscope, Andor Spinning Disk confocal microscope, Zeiss LSM 7 Multiphoton confocal microscope, Nikon STORM super-resolution light microscope, Olympus BX50 research microscope for transmitted light, phase contrast, and epi-fluorescence microscopy, Asylum Research MFP-3D BIO atomic force microscope, Asylum Research Cypher Environmental atomic force microscope,Arcturus XT-Ti Laser Capture Microdissector system, Olympus IX70 inverted microscope with associated Applied BioPhysics Electri Cell-Substrate Impedance Sensing (ECIS Ztheta) system, Leica VERSA 8 whole slide imager, Dell workstations containing Molecular Devices MetaMorph image analysis software for complex quantitative image analysis, Indica Labs HALO software, Improvision Volocity, MBR StereoInvestigator. USEDit, microscopy imaging, transmission electron microscope, microscope, image analysis service, ABRF is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: University of Vermont; Vermont; USA
NCRR S10RR025498;
NIH Office of the Director 1S10OD025030
Open ABRF_22 https://coremarketplace.org/?FacilityID=22 SCR_018821 , UVM - Microscopy Imaging Center, Vermont University Larner College of Medicine Microscopy Imaging Center, University of Vermont Larner College of Medicine Microscopy Imaging Center 2026-02-16 09:49:33 50
University of Nebraska Medical Center Advanced Microscopy Core Facility
 
Resource Report
Resource Website
10+ mentions
University of Nebraska Medical Center Advanced Microscopy Core Facility (RRID:SCR_022467) service resource, core facility, access service resource Facility houses imaging technologies ranging from super resolution (~ 0.120 um to 0.020 um) to microscopic (~ 0.300 um) to mesoscopic (~ 1 um) biomedical imaging. Imaging specialists provide training and/or actively assist researchers collecting images across imaging instrumentation. Instrumentation includes Zeiss ELYRA PS.1 is inverted microscope for super resolution (SR) structured illumination microscopy (SIM) and single molecule localization microscopy (SMLM) including, PhotoActivated Localization Microscopy (PALM) using photo switchable/convertible fluorescent proteins, Total Internal Reflection Fluorescence (TIRF) and STochastic Optical Reconstruction Microscopy (STORM);Zeiss 800 CLSM with Airyscan is an inverted microscope dramatically increasing conventional confocal image resolution to ~180 nm using Airyscan technology; Zeiss 710 LSM is inverted microscope supporting most basic imaging applications, multi channel and spectral, co localization, live cell, 3D, and time series imaging; Zeiss Celldiscoverer 7 is widefield imaging system for automated, time lapse imaging of live samples; Zeiss Axioscan 7 is high performance whole slide scanning system for fluorescence, brightfield, and polarization imaging;Miltenyi Biotec Ultramicroscope II Light Sheet fluorescence microscope (LSFM) extends fluorescent imaging into true 3D, large scale volumetric imaging of intact tissues, organs, and small organisms. AMCF also houses several high-end data analysis workstations with premier image analysis software including HALO (Indica Labs) and IMARIS (Oxford Instruments) facilitating data rendering, analyses, and presentation options. USEDit, ABRF, biomedical imaging, microscopy is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: University of Nebraska; Nebraska; USA
NIGMS GM103427;
NIGMS GM106397;
NCI CA036727;
NCRR RR027301;
NIH Office of the Director OD030486
open ABRF_1375 https://coremarketplace.org/?FacilityID=1375&citation=1 SCR_022467 UNMC Advanced Microscopy Core Facility 2026-02-16 09:50:20 18
Nested containment list
 
Resource Report
Resource Website
Nested containment list (RRID:SCR_027849) NCLS, NCList software resource, software toolkit, software library Software library for nested containment list data structure for interval overlap queries, like interval tree. It is a static interval-tree that is fast for both construction and lookups. nested containment list data structure, interval overlap queries, static interval-tree, construction and lookups, NCRR U54 RR021813;
NSF
PMID:17234640 Free, Available for download, Freely available SCR_027849 , Nested Containment List (NCList), Nested Containment List 2026-02-16 09:51:31 0
Resource Center for Medical Ultrasonic Transducer Technology
 
Resource Report
Resource Website
1+ mentions
Resource Center for Medical Ultrasonic Transducer Technology (RRID:SCR_001404) UTRC training resource Biomedical technology research center focusing on the development of very high frequency (above 20 MHz) ultrasonic transducers/arrays for applications in medicine and biology that include ophthalmology, dermatology, vascular surgery, and small animal imaging. The research is pursued simultaneously in three directions: novel piezoelectric materials, very high frequency single element transducers and linear arrays, and finite element modeling and material property measurements. The Center also serves the community through collaborative efforts with investigators having a research interest in high-frequency ultrasound imaging. In addition, it performs the function of training and information dissemination by offering conferences, seminars and specialized courses at the University of Southern California. The Center has set forth a number of goals which define its mission: * Conduct novel research and development of very high frequency (>20MHz) ultrasonic transducers, arrays and imaging applications * Collaborate with other academic institutions, non-profit organizations, and small businesses supported by the NIH to further the development of these high-frequency applications and provide the expertise in transducers necessary for project success * Serve as an educational center for training scientists and engineers interested in ultrasonic transducer technology One of the primary goals of the Center is to provide service to outside investigators and small business. Often an investigator or company has a specific application in mind but is without the expertise to develop the necessary ultrasonic device. Investigators at academic institutions, research institutes, or small businesses supported by NIH grants who have a need for medical ultrasound transducers and are interested in a collaborative effort should contact Dr. Hyung Ham Kim or Dr. K. Kirk Shung. Ultrasound transducers and components can be fabricated either completely by center personnel or in a joint effort with other investigators. In addition, collaborators are encouraged to visit the facility for additional training in fabrication and assembly. ultrasonic transducer, array, ultrasound, imaging has parent organization: University of Southern California; Los Angeles; USA NCRR 1S10RR023653-01 THIS RESOURCE IS NO LONGER IN SERVICE nlx_152627 SCR_001404 Ultrasonic Transducer Resource Center, USC Resource Center for Medical Ultrasonic Transducer Technology, Resource on Medical Ultrasonic Transducer Technology 2026-02-14 02:00:08 3
Madison Metabolomics Consortium Database
 
Resource Report
Resource Website
50+ mentions
Madison Metabolomics Consortium Database (RRID:SCR_007803) MMCD data or information resource, database, resource A database which supports high-throughput NMR and MS approaches to the identification and quantification of metabolites present in biological samples. MMCD serves as a hub for information on small molecules of biological interest gathered from electronic databases and the scientific literature. Each metabolite entry in the MMCD is supported by information in separate data fields, which provide the chemical formula, names and synonyms, structure, physical and chemical properties, NMR and MS data on pure compounds under defined conditions where available, NMR chemical shifts determined by empirical and/or theoretical approaches, calculated isotopomer masses, information on the presence of the metabolite in different biological species, and links to images, references, and other public databases. The MMCD search engine supports versatile data mining and allows users to make individual or bulk queries on the basis of experimental NMR and/or MS data plus other criteria. database, metabolomics, metabolite, consortium, nmr, mas spectroscopy, FASEB list is listed by: 3DVC
has parent organization: University of Wisconsin-Madison; Wisconsin; USA
NIDDK R21 DK070297;
NCRR P41 RR02301
PMID:18259166 Public nif-0000-03148 SCR_007803 Madison Metabolomics Consortium Database (MMCD) 2026-02-14 02:01:34 60
Resource Discovery System
 
Resource Report
Resource Website
Resource Discovery System (RRID:SCR_005554) RDS data or information resource, database Resource Discovery System is a web-accessible and searchable inventory of biomedical research resources. Powered by the Resource Discovery System (RDS) that includes a standards-based informatics infrastructure * Biositemaps Information Model * Biomedical Resource Ontology Extensions * Web Services distributed web-accessible inventory framework * Biositemap Resource Editor * Resource Discovery System Source code and project documentation to be made available on an open-source basis. Contributing institutions: University of Pittsburgh, University of Michigan, Stanford University, Oregon Health & Science University, University of Texas Houston. Duke University, Emory University, University of California Davis, University of California San Diego, National Institutes of Health, Inventory Resources Working Group Members registry, web service, source code, biomedical, software resource, material resource, funding resource, service resource, training resource, people resource has parent organization: Biositemaps Clinical and Translational Science Awards Consortium ;
National Centers for Biomedical Computing ;
NCRR 3UL1RR024153-03S1;
NCRR 5UL1RR024128-03S1;
NCRR 1UL1RR025008-01;
NCRR 1UL1RR024146-01;
NCRR 1UL1RR024986-01;
NCRR 1UL1RR024153-01;
NIDA 3U54DA021519-04S1;
NHGRI 3U54HG004028-04S
nlx_144645 SCR_005554 2026-02-14 02:06:28 0
Recombinase (cre) Activity
 
Resource Report
Resource Website
10+ mentions
Recombinase (cre) Activity (RRID:SCR_006585) Recombinase Activity data or information resource, database Curated data about all recombinase-containing transgenes and knock-ins developed in mice providing a comprehensive resource delineating known activity patterns and allows users to find relevant mouse resources for their studies. cre, recombinase, transgene, knock-in, allele, expression, activity pattern, mutagenesis, promoter, driver, image, tissue, specificity assay is related to: International Mouse Strain Resource
is related to: CREATE
is related to: JAX Cre Repository
is related to: Allen Institute for Brain Science
is related to: CRE Driver Network
is related to: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders
is related to: EUCOMMTOOLS
has parent organization: Mouse Genome Informatics (MGI)
NCRR RR03 2656;
NICHD HD062499;
European Union HEALTH-F4-2009-223487
SCR_017520, nlx_152803 http://www.creportal.org/ SCR_006585 Cre Portal 2026-02-14 02:06:26 21
Homophila
 
Resource Report
Resource Website
Homophila (RRID:SCR_007717) data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE, documented on June 23, 2013. Homophila utilizes the sequence information of human disease genes from the NCBI OMIM (Online Mendelian Inheritance in Man) database in order to determine if sequence homologs of these genes exist in the current Drosophila sequence database (FlyBase). Sequences are compared using NCBI's BLAST program. The database is updated weekly and can be searched by human disease, gene name, OMIM number, title, subtitle and/or allelic variant descriptions. homolog, human disease, human disease gene, human, gene, cognate is related to: OMIM
has parent organization: University of California at San Diego; California; USA
NCRR P 41 RR08605-06 PMID:11752278
PMID:11381037
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-02976 SCR_007717 Human disease to drosophila database 2026-02-14 02:06:30 0
Alternative Splicing Annotation Project II Database
 
Resource Report
Resource Website
1+ mentions
Alternative Splicing Annotation Project II Database (RRID:SCR_000322) ASAP II data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE, documented on 8/12/13. An expanded version of the Alternative Splicing Annotation Project (ASAP) database with a new interface and integration of comparative features using UCSC BLASTZ multiple alignments. It supports 9 vertebrate species, 4 insects, and nematodes, and provides with extensive alternative splicing analysis and their splicing variants. As for human alternative splicing data, newly added EST libraries were classified and included into previous tissue and cancer classification, and lists of tissue and cancer (normal) specific alternatively spliced genes are re-calculated and updated. They have created a novel orthologous exon and intron databases and their splice variants based on multiple alignment among several species. These orthologous exon and intron database can give more comprehensive homologous gene information than protein similarity based method. Furthermore, splice junction and exon identity among species can be valuable resources to elucidate species-specific genes. ASAP II database can be easily integrated with pygr (unpublished, the Python Graph Database Framework for Bioinformatics) and its powerful features such as graph query, multi-genome alignment query and etc. ASAP II can be searched by several different criteria such as gene symbol, gene name and ID (UniGene, GenBank etc.). The web interface provides 7 different kinds of views: (I) user query, UniGene annotation, orthologous genes and genome browsers; (II) genome alignment; (III) exons and orthologous exons; (IV) introns and orthologous introns; (V) alternative splicing; (IV) isoform and protein sequences; (VII) tissue and cancer vs. normal specificity. ASAP II shows genome alignments of isoforms, exons, and introns in UCSC-like genome browser. All alternative splicing relationships with supporting evidence information, types of alternative splicing patterns, and inclusion rate for skipped exons are listed in separate tables. Users can also search human data for tissue- and cancer-specific splice forms at the bottom of the gene summary page. The p-values for tissue-specificity as log-odds (LOD) scores, and highlight the results for LOD >= 3 and at least 3 EST sequences are all also reported. exon, gene structure, genome, alternative splicing, cancer genome alignment, intron, isoform, orthologous exon, orthologous gene, orthologous intron, protein sequence, splice site, tissue, genome alignment, cancer is related to: ASAP: the Alternative Splicing Annotation Project
has parent organization: University of California at Los Angeles; California; USA
NCRR U54 RR021813;
NIDCR DE-FC02-02ER63421
PMID:17108355 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-02572 SCR_000322 ASAP II Database, Alternative Splicing Annotation Project II 2026-02-14 02:05:31 2
MS-GF+
 
Resource Report
Resource Website
100+ mentions
MS-GF+ (RRID:SCR_015646) software resource Software that performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database. protein idenitification, peptide sequence, ms, ms spectrum, proteomic, bio.tools, FASEB list is listed by: Debian
is listed by: bio.tools
has parent organization: Pacific Northwest National Laboratory
NCRR RR018522;
NCRR 1-P41-RR024851;
NIAID ;
W.R. Wiley Environmental Molecular Science Laboratory
PMID:25358478 Free, Available for download, Acknowledgment requested biotools:ms-gf https://github.com/sangtaekim/msgfplus
https://bio.tools/ms-gf
SCR_015646 MSGF+, MSGFPlus 2026-02-14 02:03:07 155
EcoCyc
 
Resource Report
Resource Website
100+ mentions
EcoCyc (RRID:SCR_002433) EcoCyc, EcoCyc REF data or information resource, database Database for the bacterium Escherichia coli K-12 MG1655, the EcoCyc project performs literature-based curation of the entire genome, and of transcriptional regulation, transporters, and metabolic pathways. The long-term goal of the project is to describe the molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to facilitate a system-level understanding of E. coli. EcoCyc is an electronic reference source for E. coli biologists, and for biologists who work with related microorganisms. genome, metabolic pathway, transcription, transporters, escherichia coli, transcriptional regulation, metabolism, pathway, FASEB list uses: Pathway Tools
is used by: NIF Data Federation
is listed by: OMICtools
is listed by: BioCyc
is related to: MultiFun
is related to: BioCyc
is related to: BioCyc
is related to: AmiGO
is related to: NCBI BioSystems Database
is related to: Pathway Tools
has parent organization: Stanford Research Institute International
NCRR ;
NIGMS GM077678;
NIGMS GM71962
PMID:23143106
PMID:21097882
Free, Freely available OMICS_01645, nif-0000-02783, r3d100011277 https://doi.org/10.17616/R34K99 SCR_002433 EcoCyc REF 2026-02-14 02:05:40 482
National Biomedical Computation Resource
 
Resource Report
Resource Website
10+ mentions
National Biomedical Computation Resource (RRID:SCR_002656) NBCR biomedical technology research center, training resource Biomedical technology research center that conducts, catalyzes and enables multiscale biomedical research, focusing on four key activities: 1) integrating computational, data and visualization resources in a transparent, advanced grid environment to enable better access to distributed data, computational resources, instruments and people; 2) developing and deploying advanced computational tools for modeling and simulation, data analysis, query and integration, three-dimensional image processing and interactive visualization; 3) delivering and supporting advanced grid/cyberinfrastructure for biomedical researchers; and 4) training a cadre of new researchers to have an interdisciplinary, working knowledge of computational technology relevant to biomedical scientists. NBCR enables biomedical scientists to address the challenge of integrating detailed structural measurements from diverse scales of biological organization that range from molecules to organ systems in order to gain quantitative understanding of biological function and phenotypes. Predictive multi-scale models and their driving biological research problems together address issues in modeling of sub-cellular biophysics, building molecular modeling tools to accelerate discovery, and defining tools for patient-specific multi-scale modeling. NBCR furthers these driving problems by developing tools and models based on rapid advances in mathematics and information technology, incorporating them into NBCR pipelines or problem solving environments, and addressing the inevitable changes in the underlying cyber-infrastructure technologies and continually adapting codes over time. Their technology focus integrates both the biological applications and the underlying support software into reproducible science workflows that can function across a number of physical infrastructures. computation, molecule, visualization, software, cyberinfrastructure, biomedical, computing, informatics, computational tool, modeling, simulation, data analysis, query, integration, image processing, grid computing, cluster, computing and informatics technology center has parent organization: University of California at San Diego; California; USA
is parent organization of: MEME Suite - Motif-based sequence analysis tools
is parent organization of: Grid Enabled Molecular Science Through Online Networked Environments
NIGMS GM103426;
NCRR P41 RR08605
Free, Available for download, Freely available nif-0000-22270 SCR_002656 NBCR - National Biomedical Computation Resource 2026-02-14 02:07:19 15
National Center for Microscopy and Imaging Research
 
Resource Report
Resource Website
100+ mentions
National Center for Microscopy and Imaging Research (RRID:SCR_002655) NCMIR biomedical technology research center, training resource Biomedical technology research center that develops computer-aided, advanced microscopy for the acquisition of structural and functional data in the dimensional range of 1 nm to 100 um, a range encompassing macromolecules, subcellular structures and cells. Novel specimen-staining methods, imaging instrumentsincluding intermediate high-voltage transmission electron microscopes (IVEMs) and high-speed, large-format laser-scanning light microscopesand computational capabilities are available for addressing mesoscale biological microscopy of proteins and macromolecular complexes in their cellular and tissue environments. These technologies are developed to bridge understanding of biological systems between the gross anatomical and molecular scales and to make these technologies broadly available to biomedical researchers. NCMIR provides expertise, infrastructure, technological development, and an environment in which new information about the 3D ultrastructure of tissues, cells, and macromolecular complexes may be accurately and easily obtained and analyzed. NCMIR fulfills its mission through technology development, collaboration, service, training, and dissemination. It aims to develop preparative methods and analytical approaches to 3D microscopy applicable to neurobiology and cell biology, incorporating equipment and implementing software that expand the analysis of 3D structure. The core research activities in the areas of specimen development, instrument development, and software infrastructures maximize the advantages of higher voltage electron microscopy and correlated light microscopies to make ambitious imaging studies across scales routine, and to facilitate the use of resources by biomedical researchers. NCMIR actively recruits outside users who will not only make use of these resources, but who also will drive technology development and receive training. microscopy, electron microscopy, electron tomography, 3d imaging, instrumentation, intermediate voltage electron microscopy, light microscopy, specimen preparation, telemicroscopy, image, software, tissue, cell, macromolecular complex, macromolecule, subcellular structure, 3d microscopy, neurobiology, cell biology, 3d structure, imaging technology center has parent organization: University of California at San Diego; California; USA
is parent organization of: XFido
is parent organization of: Xvoxtrace
is parent organization of: National Center for Microscopy and Imaging Research: SAGE
is parent organization of: Combine RTS2000
is parent organization of: Montage RTS2000
is parent organization of: Manual Align RTS2000
NIGMS ;
NCRR P41 GM103412
Free, Available for download, Freely available nif-0000-22234, SCR_016627 SCR_002655 National Center for Microscopy and Imaging Research 2026-02-14 02:07:51 252
BioCAT
 
Resource Report
Resource Website
500+ mentions
BioCAT (RRID:SCR_001440) BioCAT biomedical technology research center, training resource Biomedical technology research center and training resource for the study of the structure of partially ordered biological molecules, complexes of biomolecules and cellular structures under conditions similar to those present in living cells and tissues. The goal of research at BioCAT is to determine the detailed structure and mechanism of action of biological systems at the molecular level. The techniques used are X-ray fiber diffraction, X-ray solution scattering and X-ray micro-emission and micro-absorption spectroscopy, with an emphasis on time-resolved studies and the development of novel techniques. biological system, structure, function, molecule, complex, cellular structure, cell, tissue, x-ray, fiber diffraction, solution scattering, micro-emission, micro-absorption spectroscopy, time-resolved, x-ray micro-imaging, macromolecule, structural biology technology center, photon, microprobe has parent organization: Argonne National Laboratory NCRR U41RR008630 nlx_152666 http://www.bio.aps.anl.gov/ SCR_001440 Biophysics Collaborative Access Team 2026-02-14 02:07:18 928
National Resource for Quantitative Functional MRI
 
Resource Report
Resource Website
1+ mentions
National Resource for Quantitative Functional MRI (RRID:SCR_006716) Resource for Quantitative Functional MRI biomedical technology research center, training resource Biomedical technology research center that provides expertise for the design of quantitative magnetic resonance imaging (MRI) and spectroscopy (MRS) data acquisition and processing technologies that facilitate the biomedical research of a large community of clinicians and neuroscientists in Maryland and throughout the USA. These methods allow noninvasive assessment of changes in brain anatomy as well as in tissue metabolite levels, physiology, and brain functioning while the brain is changing size during early development and during neurodegeneration, i.e. the changing brain throughout the life span. The Kirby Center has 3 Tesla and 7 Tesla state of the art scanners equipped with parallel imaging (8, 16, and 32-channel receive coils) and multi-transmit capabilities. CIS has an IBM supercomputer that is part of a national supercomputing infrastructure. Resources fall into the following categories: * MRI facilities, image acquisition, and processing * Computing facilities and image analysis * Novel statistical methods for functional brain imaging * Translating laboratory discoveries to patient treatment quantitative magnetic resonance imaging, magnetic resonance spectroscopy, mri, fmri, function, metabolism, physiology, brain, neurodevelopment, neurodegeneration, image acquisition, image processing, computing, image analysis, statistical method, neuroimaging, development has parent organization: Kennedy Krieger Institute
has parent organization: Johns Hopkins University; Maryland; USA
NIBIB P41 EB015909;
NCRR P41 RR015241
nlx_152634 http://mri.kennedykrieger.org/nationalresource/index.html SCR_006716 Resource for Quantitative Functional Magnetic Resonance Imaging 2026-02-14 02:07:31 1
National Bio-Organic Biomedical Mass Spectrometry Resource Center
 
Resource Report
Resource Website
1+ mentions
National Bio-Organic Biomedical Mass Spectrometry Resource Center (RRID:SCR_009004) Mass Spectrometry Facility biomedical technology research center, training resource Provides high-performance tandem mass spectrometry and proteomics, including multiplexed quantitative comparative analysis of protein and post-translational modifications, and a suite of tools for the analysis of mass spectrometry proteomics data. It provides both scientific and technical expertise and state-of-the-art high-performance, tandem mass spectrometric instrumentation. The facility also provides a service for small molecule analysis. Significant instrumentation in the facility includes three QSTAR quadrupole orthogonal time of flight instruments, and both an LTQ-Orbitrap platform with electron transfer dissociation (ETD) and an LTQ-FT linear ion trap FT-ICR instrument equipped with the ability to perform electron capture dissociation (ECD). The Center also has a 4700 Proteomic Analyzer MALDI tandem time of flight instrument; as well as a QTRAP 5500 hybrid triple quadrupole linear ion trap instrument; and a Thermo Fisher LTQ Orbitrap Velos. Major research focuses within the Center are the analysis of post-translational modifications, including phosphorylation and O-GlcNAcylation and development of methods for quantitative comparative analysis of protein and post-translational modification levels. The program also continues to develop one of the leading suites of tools for analysis of mass spectrometry proteomics data, Protein Prospector. The current web-based release allows unrestricted searching of MS and MSMS data, as well as the ability to perform comparative quantitative analysis of samples using isotopic-labeling reagents. It is the only freely-available web-based resource that allows this type of analysis. systems biology technology center, mass spectrometry, proteomics has parent organization: University of California at San Francisco; California; USA NCRR ;
NIGMS P41GM103481
nlx_152680 SCR_009004 UCSF Mass Spectrometry Facility 2026-02-14 02:07:25 2
Eagle I
 
Resource Report
Resource Website
10+ mentions
Eagle I (RRID:SCR_013153) eagle-i, eagle i, eaglei data or information resource, database Web application to discover resources available at participating networked universities. This distributed platform for creating and sharing semantically rich data is built around semantic web technologies and follows linked open data principles. ontology, semantic web, rdf, sparql endpoint, linked open data, distributed platform, protocol lists: BWH Partners Tissue and Blood Repository
lists: MSU Subzero Science and Engineering Research Core Facility
lists: OHSU MRI Support Core Laboratory
lists: Penn Cell and Developmental Biology Zebrafish Core
lists: Penn Clinical Research Computing Unit
lists: Penn Community Outreach Using Health System Informatics Core
lists: UPR Medical Mycology Laboratory
lists: Vanderbilt Bradykinin Core Laboratory
lists: BWH Surgical Planning Laboratory
lists: Children's Hospital Informatics Program
lists: DF/HCC Health Communication Core
lists: DF/HCC Specialized Histopathology Services Core
lists: Dartmouth College Clinical Pharmacology Shared Resource Core Facility
lists: Dartmouth Geospatial Shared Resource
lists: Dartmouth Optical Cellular Imaging
lists: FAMU Drug Discovery Core Facility
lists: FAMU Flow cytometry laboratory
lists: HMS NERCE FACSCalibur Flow Cytometer Resource
lists: Harvard HSCI iPS Cell Core Facility
lists: Harvard NeuroDiscovery Center - Biomarker Study
lists: Harvard Partners HealthCare Center for Personalized Genetic Medicine Bioinformatics Core Facility
lists: Hunter NMR Spectroscopy Facility
lists: JSU Environmental Toxicology Core Lab
lists: MGH Center for Morphometric Analysis
lists: MGH Vector Development and Production Core Facility
lists: MSU Magnetic Resonance Core Laboratory
lists: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core
lists: Penn Research Instrumentation Shop
lists: Penn Small Animal Imaging Facility: PET/SPECT/CT Sub-Core
lists: Penn Translational Biomarker Core
lists: UH Manoa Insect Museum
lists: UTEP BSL 3 Laboratory
lists: UTSA Engineering Core
lists: Vanderbilt Flow Cytometry Core Laboratory
lists: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core
lists: Vanderbilt X-Ray Photoelectron Spectroscopy Lab
lists: Wyss Institute Imaging Core
lists: XULA Materials Research - Shared Instrumentation Facilities
lists: Hunter Genomic Facility
lists: UPR Analysis Resource Center Confocal Microscopy Core Laboratory
lists: UPR Conrado F. Asenjo Library
lists: UPR Confocal Microscope Facility
lists: UPR Department of Environmental Health Core Laboratory
lists: HSPH Trace Metals Laboratory
lists: Dartmouth Science Division Electronics Shop
lists: Arnold Arboretum of Harvard University: Weld Hill Microscopy Lab
lists: Arnold Arboretum of Harvard University: Weld Hill Molecular Lab
lists: BWH Cell Culture and Microscopy Core
lists: Hunter Nanoscale Analytical Facility
lists: Dartmouth SYNERGY Clinical Research Unit
lists: Dartmouth Shared Instruments Core Laboratory
lists: Vanderbilt Energy Balance Core Laboratory
lists: BWH Circulating Tumor Cell Core
lists: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility
lists: HSPH Molecular Analysis Facility
lists: HSPH Organic Chemistry Laboratory
lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility
lists: Harvard FAS Magnetic Resonance Laboratory
lists: Howard Flow Cytometry Core
lists: CAU CCRTD-Histology Core
lists: Penn Laser Confocal Microscope Core
lists: Vanderbilt Free Radicals in Medicine Core
lists: UAF Alaska Stable Isotope Facility
lists: CDU Cancer Research and Training Core Facility
lists: CHB Ultrasound
lists: Penn Automated Claims and Medical Record Databases
lists: Arnold Arboretum of Harvard University: Weld Hill Growth Facilities
lists: BIDMC Biomedical Research Informatics Core Laboratory
lists: BIDMC CVVR Flow Cytometry Core
lists: BIDMC Cardiac Physiology Core Laboratory
lists: BIDMC Clinical Research Coordinator Core Laboratory
lists: BIDMC DNA Sequencing Core
lists: HMS Flow Cytometry Facility
lists: Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center
lists: BIDMC Longwood Small Animal Imaging Core Facility
lists: CHB Cellular Imaging Core
lists: BIDMC Mass Spectrometry Core
lists: BIDMC Multi-Gene Transcriptional Profiling Core
lists: BIDMC Preclinical Murine Pharmacogenetics Core
lists: BIDMC Real-Time PCR Core
lists: BIDMC Transgenic Core Facility
lists: BIDMC X-ray Crystallography Core
lists: BIDMC eData Collection Core
lists: BWH Biostatistics Center
lists: BWH CytoGenomics
lists: BWH DNA Sequencing Core
lists: BWH Flow Cytometry Core Laboratory
lists: BWH Sleep and EEG Core
lists: BWH Specialty Assay Research Core Laboratory
lists: CAU CCRTD-Proteomics
lists: BWH Transgenic Core Facility
lists: BWH-BRI Antibody Core Facility
lists: Broad Genetic Analysis Platform
lists: CAU CCRTD-Cell Biology
lists: CAU CCRTD-Molecular Biology
lists: HSDM Micro CT Core
lists: CAU CCRTD-Structural Biology
lists: Clark Atlanta University Collaborative Center for Cancer Genomics and Bioinformatics Core Facility
lists: CCNY Fluorescence Activated Cell Sorting
lists: CCNY Microscopy Facility
lists: CCNY RCMI Core Facility
lists: CDU AXIS Biomedical Informatics function
lists: CDU Exercise Physiology Laboratory
lists: CDU Metabolic and Oxidative Stress Core Laboratory
lists: CDU Morphometry and Stereology Laboratory
lists: CDU Vivarium
lists: CHB Advanced Fetal Care Center
lists: CHB Cell Sorter Core
lists: CHB Transgenic Core Laboratory
lists: CHB Cellular Neuroscience Core Laboratory
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lists: Penn Investigational Drug Service
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lists: Pennsylvania University Perelman School of Medicine Stem Cell and Xenograft Core Facility
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lists: Puerto Rico Clinical and Translational Research Consortium Research Subject Advocate
lists: Ragon Institute Biostatistics Core
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lists: SERI Flow Cytometry Core Facility
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lists: Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services
lists: UAF Community Engagement and Clinical Support Core
lists: UAF DNA Core Laboratory
lists: UAF Epidemiology and Biostatistics Core Laboratory
lists: UAF Nutrition and Physical Activity Core
lists: UAF Optical and Tissue Culture Core
lists: UCC Behavioral Testing Facility
lists: UCC Biomedical Proteomic Facility
lists: UCC Data Management and Statistical Research Support Unit
lists: UH Manoa COBRE Molecular and Cellular Immunology Core
lists: UCC HIV and Substance of Abuse Laboratory Core
lists: UCC Immunocytochemistry Laboratory
lists: UCC Neuronal Glia Culture Facility
lists: UCC Optical Imaging Facility
lists: UCC Protein and Nucleic Acid Core Facility
lists: UCC Transmission Electron Microscopy Laboratory
lists: UH Manoa NMR Lab
lists: UH Manoa Hawaii Center for AIDS Imaging Analysis Core
lists: UH Manoa Analytical Biochemistry Shared Resource
lists: UH Manoa BSL-3 Containment Facility
lists: UH Manoa Biological Electron Microscope Facility
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lists: University of Hawaii at Manoa Centers of Biomedical Research Excellence Bioinformatics Core Facility
lists: UH Manoa COBRE Genomics Core
lists: UH Manoa RCMI Molecular Pathology Core
lists: UH Manoa COBRE Mouse Phenotyping Core
lists: UH Manoa COBRE Transgenic Core
lists: UH Manoa Clinical Protocol and Data Management Shared Resource
lists: UH Manoa Evolutionary Genetics Core Facility
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lists: UH Manoa HURL Submersible Facility
lists: UH Manoa Hawaii Space Flight Laboratory
lists: University of Hawaii at Manoa INBRE Bioinformatics Core Facility
lists: University of Hawaii at Manoa Informatics Shared Resource
lists: UH Manoa Laboratory Support Shared Resources
lists: UH Manoa Lyon Arboretum
lists: UH Manoa Nutrition Support Shared Resource
lists: UH Manoa PBRC Computer Network Support Facility
lists: UH Manoa Pathology Shared Resources
lists: UH Manoa RCMI Biostatistics and Data Management Facility
lists: University of Hawaii at Manoa Greenwood Molecular Biology Facility
lists: UH Manoa RCMI Histology and Imaging Core Facility
lists: UH Manoa RCMI Pathogen Reference and Reagent Core
lists: UPR Animal Resources Center
lists: UH Manoa SOEST Engineering Support Facility
lists: UH Manoa SOEST Flow Cytometry Facility
lists: UH Manoa Sequencing Facility
lists: UPR AABRE Program: Functional Genomics Research Center
lists: UPR AABRE Program: Human Genetics Center
lists: UPR AABRE Program: Protein Mass Spectrometry Facility
lists: UPR AABRE Program: Sequencing and Genotyping Facility
lists: University of Puerto Rico Biomedical Informatics Research Core
lists: UPR Cayo Santiago Caribbean Primate Research Center
lists: UPR Center for Drug Information and Research
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lists: Vanderbilt Biospecimen Shared Resource
lists: Vanderbilt Biostatistics Collaboration Center
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lists: HMS Research Imaging Solutions
lists: Harvard SERI Graphic Services Core
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lists: BWH Specimen Bank
lists: MGH Martinos Center for Biomedical Imaging Core Facility
lists: HNDC NeuroBehavior Laboratory Core
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lists: HNDC Advanced Tissue Resource Center
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is listed by: FORCE11
is related to: CTSAconnect
is related to: Clinical and Translational Science Awards Consortium
has parent organization: Harvard University; Cambridge; United States
has parent organization: Oregon Health and Science University; Oregon; USA
is parent organization of: eagle-i research resource ontology
NCRR U24 RR029825;
ARRA
PMID:22434835 Available to external user, The community can contribute to this resource nlx_143592 https://www.eagle-i.org/
https://www.force11.org/node/4661
SCR_013153 2026-02-14 02:06:41 10
CTSA-IP
 
Resource Report
Resource Website
CTSA-IP (RRID:SCR_006380) CTSA-IP data or information resource, database, community building portal, portal Database that aggregates and markets technologies from CTSA institutions as well as those of the National Institutes of Health, with the goal of enhancing research activity and private partnerships across the CTSA consortium. Regular, automatic updating with a standardized template facilitates broad participation by CTSA consortium members. Currently, there are over a dozen CTSAs contributing information on their technologies to the site. CTSA-IP Mission * Intellectual Property information exchange * Links publicly available licensing opportunities from CTSI Institutions in an easily searchable format that connects providers & users. * Aim of creating a consortium view of IP, licensing & sponsored research opportunities. * Stimulus to collaboration and partnering with and between CTSA member institutions. technology, intellectual property, partnership, aggregator, licensing opportunity is related to: Clinical and Translational Science Awards Consortium
has parent organization: University of Rochester; New York; USA
NCRR UL1 RR024160 PMID:22029803 Open access nlx_152160 SCR_006380 Clinical and Translational Sciences Award Intellectual Property 2026-02-15 09:19:14 0
National Center for Research Resources - Primate Resources
 
Resource Report
Resource Website
1+ mentions
National Center for Research Resources - Primate Resources (RRID:SCR_006863) NCRR Primate Resources organism supplier, material resource, biomaterial supply resource THIS RESOURCE IS NO LONGER IN SERVICE, documented on October 16, 2013. NCRR has been absorbed into other parts of the National Institutes of Health. This organizational structure is no longer available. Provides laboratory scientists and clinical researchers with the resources and tools they need to understand, detect, treat and prevent a wide range of diseases. Animal models, such as nonhuman primates, are a critical component of biomedical research, having profound implications for public health. Scientists depend on laboratory animals and other nonhuman models for investigating biological processes, studying the causes of diseases and testing promising new therapies. Nonhuman primates, in particular, are important for translational research because of their close physiological similarities to humans. They enable discoveries that have direct application to human studies, bridging the gap between basic science and human medicine. Discoveries in animal models are helping scientists test treatments for human conditions such as drug addiction, obesity, malaria, HIV/AIDS and neurodegenerative diseases, accelerating the pace at which these research advances can be translated into treatments for patients. Through its Division of Comparative Medicine, NCRR offers a wide variety of primate resources for NIH-funded scientists across the nation. Additionally, funding opportunities are available to National Primate Research Centers. Eight National Primate Research Centers (NPRCs) located throughout the country provide animals, facilities and expertise in all aspects of nonhuman primate biology and husbandry. These facilities and resources enable collaborative research among NPRC staff scientists, investigators from the NPRC host institution and other NIH-funded researchers. Major areas of research benefiting from the primate centers include AIDS, avian flu, Alzheimer''s disease, Parkinson''s disease, diabetes, asthma and endo-metriosis. The centers????????????????? specialized resources are intended to support investigators who receive their primary research project funding from NIH, but they also may be used by investigators who are funded by other federal, state and local agencies, as well as by research foundations and the private sector. Together the primate centers have more than 28,000 nonhuman primates of 20 different species. This portal covers the following topics: * National Primate Research Centers * Monkey Research Resources * Chimpanzee Research Resources * Chimpanzee Management Program * Specific-Pathogen-Free Macaque Resources * Nonhuman Primate Research Reagents grant, animal model, non-human primate, monkey, chimpanzee, reagent is listed by: One Mind Biospecimen Bank Listing
is parent organization of: Yerkes National Primate Research Center
is parent organization of: Washington National Primate Research Center
NCRR ;
NIH Blueprint for Neuroscience Research
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00495 http://www.ncrr.nih.gov/comparative_medicine/resource_directory/primates.aspcenters, http://www.ncrr.nih.gov/primates SCR_006863 Nonhuman Primate Research Resources 2026-02-15 09:19:20 1
Alamogordo Primate Facility
 
Resource Report
Resource Website
Alamogordo Primate Facility (RRID:SCR_008376) APF organism supplier, material resource, biomaterial supply resource THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. It houses chimpanzees that have been used in biomedical research, but no active, invasive research is conducted on the site. The APF provides for the long-term care and husbandry of chimpanzees that have been used in biomedical research. Charles River Laboratories Inc. operates the facility under contract with the National Institutes of Health. To be used in continuing virological research, the animals must be transferred to active chimpanzee research settings. All chimpanzees at the APF have been exposed to various microorganisms, such as hepatitis C virus and HIV. For this reason, they may be candidates for studies related to these diseases. The National Center for Research Resources (NCRR) may remove infected animals from the APF to other accredited chimpanzee facilities for research purposes. Investigators interested in the chimpanzees at the APF should contact Dr. Harold Watson in NCRR''s Division of Comparative Medicine to discuss research requirements. animal, biomedical, chimpanzee, comparative medicine, disease, hepatitis c, hiv, husbandry, infection, microorganism, primate, research, virological, virus NCRR THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-25894 SCR_008376 Alamogordo Primate Facility 2026-02-15 09:19:50 0

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