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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Airtrack
 
Resource Report
Resource Website
1+ mentions
Airtrack (RRID:SCR_021561) data or information resource, instrument resource, portal, project portal Portal provides head fixed behavioral environment that uses lightweight physical maze floating on air table that moves around animals body under direct control of animal itself. Instrument, head fixed, behavioral environment, lightweight physical maze, maze floating on air table, table moves around animal, real world floating environment, OpenBehavior is listed by: OpenBehavior
has parent organization: Humboldt University of Berlin; Berlin; Germany
DOI:10.1152/jn.00088.2016 Free, Freely available SCR_021561 2026-02-14 02:04:45 1
DIY Rodent Running Disk
 
Resource Report
Resource Website
DIY Rodent Running Disk (RRID:SCR_021558) data or information resource, instrument resource, portal, project portal Portal related to Rodent Running Disk. Provided Rodent Running Disk was developed by University of California, Berkeley scientist. Acrylic disk mounted to optical encoder to achieve fast locomotion decoding. Instrument, rodent running disk, acrylic disk, OpenBehavior is listed by: OpenBehavior
has parent organization: University of California at Berkeley; Berkeley; USA
DOI:10.1016/j.neuron.2017.12.021 Free, Freely available SCR_021558 2026-02-14 02:04:39 0
SignalBuddy
 
Resource Report
Resource Website
SignalBuddy (RRID:SCR_021553) data or information resource, instrument resource, portal, project portal Portal related to signal generation. Provided system was developed by Columbia University scientists. System includes signal generator for scientific applications which generates digital or true analog signals (sine waves, step functions, and pulse trains) and can be controlled with intuitive serial monitor interface. Instrument, signal generator, sine waves, step functions, pulse trains, OpenBehavior is listed by: OpenBehavior
has parent organization: Columbia University; New York; USA
Free, Freely available SCR_021553 2026-02-14 02:04:39 0
Craniobot project
 
Resource Report
Resource Website
Craniobot project (RRID:SCR_021573) data or information resource, instrument resource, portal, project portal Portal provides computer numerical controlled robot for cranial microsurgeries developed by University of Minnesota scientist. Included cranial microsurgery platform combines automated skull surface profiling with computer numerical controlled milling machine to perform variety of cranial microsurgical procedures on mice. Instrument, removing skull sections, access brain, computer numerical controlled robot, cranial microsurgeries robot, OpenBehavior is listed by: OpenBehavior
is related to: craniobot
has parent organization: University of Minnesota Twin Cities; Minnesota; USA
DOI:10.1038/s41598-018-37073-w Free, Freely available SCR_021573 Craniobot 2026-02-14 02:04:20 0
pyControl project
 
Resource Report
Resource Website
pyControl project (RRID:SCR_021574) data or information resource, instrument resource, portal, project portal Portal provides system that combines open source hardware and software for control of behavioral experiments. Open source framework, combines Python scripts and Micropython microcontroller. Framework can be run through command line interface, or in user friendly graphical user interface that allows users to manage variety of devices such as nose pokes, LED drivers, stepper motor controllers and more. Data collected using this system can then be imported into Python for data analysis. Instrument, Micropython microcontroller, Python scripts, behavioral experiment control, OpenBehavior is listed by: OpenBehavior
is related to: pyControl
Free, Freely available SCR_021574 pyControl system 2026-02-14 02:04:45 0
PhotometryBox
 
Resource Report
Resource Website
PhotometryBox (RRID:SCR_021571) data or information resource, instrument resource, portal, project portal Portal provides open source control system for in vivo fluorescence measurements from deep brain structures developed by University of California, San Francisco scientists. Microcontroller based solution for controlling optical components in intracranial photometry system and processing resulting signal. Instrument, fluorescence measurements, deep brain structures, optical fibers, intracranial photometry system, OpenBehavior is listed by: OpenBehavior
has parent organization: University of California at San Francisco; California; USA
DOI:10.1016/j.jneumeth.2018.10.022 Free, Freely available SCR_021571 2026-02-14 02:04:17 0
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project
 
Resource Report
Resource Website
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project (RRID:SCR_021572) HOPE data or information resource, instrument resource, portal, project portal Portal provides brain implant developed by MIT scientists. Implant carries 16 movable tetrodes along with two optic fibers or two injection cannulas. Designed with help of 3D CAD software, allowing modifications for various experimental needs, such as targeting different brain regions and use in other animal species (e.g., rats and non-human primates). Implant can be designed to shape of skull of individual monkeys based on pre-implantation magnetic resonance imaging, thus optimizing fit with skull surface and making recording from deep brain regions more reliable. Instrument, neural implant, brain implant, manipulate neuronal activity, OpenBehavior is listed by: OpenBehavior
is related to: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology
has parent organization: Massachusetts Institute of Technology; Massachusetts; USA;
DOI:10.3389/fncir.2018.00041 Free, Freely available SCR_021572 Pharmacology, and Electrophysiology, Hybrid-drive combining Optogenetics, Hybrid drive combining Optogenetics 2026-02-14 02:04:39 0
CerebraLux
 
Resource Report
Resource Website
CerebraLux (RRID:SCR_021570) data or information resource, instrument resource, portal, project portal Portal provides low cost, open source, wireless probe for optogenetic stimulation. This wireless system for optogenetic stimulation was developed by UCLA scientists. Device consists of two parts. Optical component is mounted on head permanently, whereas electronic component is removable and is applied for each experiment. Device is controlled via custom GUI (built with the TkInter Python 2.7 library) which sends pulses to device via Arduino Uno. Instrument, optogenetic stimulation, wireless system, OpenBehavior is listed by: OpenBehavior
has parent organization: University of California at Los Angeles; California; USA
DOI:10.1117/1.nph.4.4.045001 Free, Freely available SCR_021570 2026-02-14 02:04:45 0
Nose Poke Device
 
Resource Report
Resource Website
Nose Poke Device (RRID:SCR_021568) data or information resource, instrument resource, portal, project portal Portal provides arduino based, 3D-printed nose poke device for rats. Includes set of instructions on how to build this device using arduino, some 3D printed parts and some off-the-shelf electronic components. Instrument, nose poke device, device for rats, arduino, 3D printed parts, electronic components, OpenBehavior is listed by: OpenBehavior
is related to: poke device arduino
Free, Freely available SCR_021568 2026-02-14 02:04:20 0
FreemoVR
 
Resource Report
Resource Website
FreemoVR (RRID:SCR_021601) software resource Software tool as virtual reality engine built on ROS and OpenSceneGraph.Perspective correct Virtual Reality for freely moving animals engine. Used for multicomputer realtime tracking and display with goal of being useful for scientific studies of vision and behavior.Part of FreemoVR system. Virtual reality engine, ROS, OpenSceneGraph, OpenBehavior is listed by: OpenBehavior
is related to: FreemoVR project
DOI:10.1038/nmeth.4399 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/freemovr/ SCR_021601 freemovr_engine 2026-02-14 02:04:18 0
Teensy-Based Interface
 
Resource Report
Resource Website
Teensy-Based Interface (RRID:SCR_021602) software resource, data processing software, data acquisition software, software application Teensy microcontroller based interface for optical imaging camera control during behavioral experiments. Camera control, Teensy 3.2, Teensy microcontroller based interface, sCMOS camera control, OpenBehavior is listed by: OpenBehavior
is related to: Teensy-Based Interface project
DOI:10.1016/j.jneumeth.2019.03.019 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/teensy-based-interface/ SCR_021602 2026-02-14 02:04:40 0
Pearce Lab Syringe Pump project
 
Resource Report
Resource Website
Pearce Lab Syringe Pump project (RRID:SCR_021566) data or information resource, instrument resource, portal, project portal Open source syringe pump apparatus developed by scientists from Michigan Technological University. Syringe pump is designed using freely available open source computer aided design (CAD) software and manufactured using open source RepRap 3-D printer and readily available parts. Instrument, syringe pump apparatus, OpenBehavior is listed by: OpenBehavior
is related to: linear actuator
has parent organization: Michigan Technological University; Houghton; USA
DOI:10.1371/journal.pone.0107216 Free, Freely available SCR_021566 Pearce Lab Syringe Pump 2026-02-14 02:04:17 0
Modular Automated Platform for Large Scale Experiments
 
Resource Report
Resource Website
Modular Automated Platform for Large Scale Experiments (RRID:SCR_021600) software resource Software tool to automate various fly handling tasks.Control software for Drosophila handling robot MAPLE. Control Drosophila handling robot MAPLE, FlySorter fly manipulation platform control, OpenBehavior is listed by: OpenBehavior
is related to: Modular Automated Platform for Large Scale Experiments project
DOI:10.1101/239459 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/maple/ SCR_021600 MAPLEControlSoftware, MAPLE v2 Control Software 2026-02-14 02:04:46 0
Operant Box for Auditory Tasks project
 
Resource Report
Resource Website
Operant Box for Auditory Tasks project (RRID:SCR_021564) data or information resource, instrument resource, portal, project portal Portal provides operant box designed to train small primates in auditory tasks.Device is based on computer and Arduino Mega 2560 board, named OBAT (Operant Box for Auditory Tasks), designed to present two different auditory stimuli to small primates.All schematics and software source code are available. Instrument, operant box, train small primates, auditory tasks, OpenBehavior is listed by: OpenBehavior
is related to: Operant Box for Auditory Tasks
DOI:10.3758/s13428-017-0906-6 Free, Freely available SCR_021564 Operant Box for Auditory Tasks 2026-02-14 02:04:20 0
Rodent Operant Bucket project
 
Resource Report
Resource Website
Rodent Operant Bucket project (RRID:SCR_021565) data or information resource, instrument resource, portal, project portal Portal for open source operant chamber, based on Arduino microcontroller platform, that can be used to train mice to respond for reward. Designed by NIDDK scientists.Apparatus contains two nose pokes, drinking well, and solenoid controlled sucrose delivery system. Chamber can run magazine training, fixed ratio and progressive ratio training schedules, and can be programmed to run more complicated behavioral paradigms. Instrument, operant chamber, Arduino microcontroller platform, train mice, reward respond, OpenBehavior is listed by: OpenBehavior
is related to: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources
is related to: Rodent Operant Bucket
DOI:10.3758/s13428-015-0603-2 Free, Freely available SCR_021565 Rodent Operant Bucket, ROBucket 2026-02-14 02:04:45 0
poke device arduino
 
Resource Report
Resource Website
poke device arduino (RRID:SCR_021608) software resource Software tool as script to test if IR led, IR photodiode, arduino and 3D printed nose poke device work properly. Part of Nose Poke Device system. OpenBehavior, nose poke device, microcontroller code, electronic parts conrol is listed by: OpenBehavior
is related to: Nose Poke Device
Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/nose-poke-device/ SCR_021608 poke_device_arduino 2026-02-14 02:04:46 0
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology
 
Resource Report
Resource Website
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology (RRID:SCR_021606) software resource Softwre tool as part of Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project for brain implant. Software resource, OpenBehavior is listed by: OpenBehavior
is related to: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project
DOI:10.3389/fncir.2018.00041 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/hope/ SCR_021606 hope 2026-02-14 02:04:20 0
Calcium Imaging data Analysis
 
Resource Report
Resource Website
10+ mentions
Calcium Imaging data Analysis (RRID:SCR_021533) CaImAn data processing software, software library, software toolkit, software application, software resource, image analysis software Open source software tool for scalable calcium imaging data analysis. Used for large scale calcium imaging analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization. calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior is listed by: OpenBehavior
is related to: Calcium Imaging data Analysis project
DOI:10.7554/elife.38173 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/caiman/ SCR_021533 2026-02-14 02:04:19 37
MRI-stereoscope project
 
Resource Report
Resource Website
1+ mentions
MRI-stereoscope project (RRID:SCR_021655) data or information resource, instrument resource, portal, project portal Project provides miniature mirror stereoscope system for MRI-scanner. System takes advantage of commonly used display equipment, MRI head coil, and display screen. Miniature Wheatstone stereoscope is used for human neuroimaging. Miniature Wheatstone stereoscope, human neuroimaging, stereoscope system, MRI-scanner, Istrument, OpenBehavior is listed by: OpenBehavior Free, Freely available SCR_021655 2026-02-14 02:04:40 1
Spike Forest
 
Resource Report
Resource Website
1+ mentions
Spike Forest (RRID:SCR_021532) data analysis software, software resource, data processing software, software application Open source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior is listed by: OpenBehavior
is related to: Spike Forest project
DOI:10.7554/elife.55167 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/spikeforest/ SCR_021532 SpikeForest, SpikeForest v2 2026-02-14 02:04:39 1

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