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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Gentle Resource Report Resource Website 1+ mentions |
Gentle (RRID:SCR_016127) | sequence analysis software, data processing software, data analysis software, software toolkit, software application, software resource | Software for DNA and amino acid editing, database management, plasmid maps, It can also be used for restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and more. | editing, database, management, plasmid maps, restriction, ligation, alignments, sequence, data, import, calculator, gel, image, display, PCR, cloning, genetic |
is listed by: Debian is listed by: OMICtools has parent organization: University of Cologne; Cologne; Germany |
Free Software Foundation | Free, Available for download | OMICS_18307 | https://sources.debian.org/src/gentle/ | SCR_016127 | GENtle | 2026-02-14 02:03:12 | 6 | ||||||
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HOMOZYGOSITYMAPPER Resource Report Resource Website 100+ mentions |
HOMOZYGOSITYMAPPER (RRID:SCR_001714) | HomozygosityMapper | data analysis service, production service resource, service resource, analysis service resource | A web-based approach of homozygosity mapping that can handle tens of thousands markers. User can upload their own SNP genotype files to the database. Intuitive graphic interface is provided to view the homozygous stretches, with the ability of zooming into single chromosomes or user-defined chromosome regions. The underlying genotypes in all samples are displayed. The software is also integrated with our candidate gene search engine, GeneDistiller, so that users can interactively determine the most promising gene. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, genotype, homozygosity score, homozygosity, bio.tools, FASEB list |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany |
PMID:19465395 | Free, Freely Available | nlx_154069, biotools:homozygositymapper, OMICS_00123 | https://bio.tools/homozygositymapper | SCR_001714 | 2026-02-14 02:06:03 | 121 | ||||||
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MADELINE Resource Report Resource Website 1+ mentions |
MADELINE (RRID:SCR_001979) | MADELINE | software resource, service resource, software application | Software tool designed for preparing, visualizing, and exploring human pedigree data used in genetic linkage studies. It converts pedigree and marker data into formats required by popular linkage analysis packages, provides powerful ways to query pedigree data sets, and produces Postscript pedigree drawings that are useful for rapid data review. | gene, genetic, genomic, c, unix, solaris, freebsd, openbsd, macos, ms-windows, cygwin, linux, pedigree, draw, linkage association, family association |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: University of Michigan; Ann Arbor; USA |
PMID:17488757 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154446, OMICS_00210 | http://eyegene.ophthy.med.umich.edu/#madeline | SCR_001979 | Madeline | 2026-02-14 02:06:06 | 5 | |||||
|
Phenoscape Knowledgebase Resource Report Resource Website 10+ mentions |
Phenoscape Knowledgebase (RRID:SCR_002821) | Phenoscape Knowledgebase | data or information resource, database | Knowledgebase that uses ontologies to integrate phenotypic data from genetic studies of zebrafish with evolutionary variable phenotypes from the systematic literature of ostariophysan fishes. Users can explore the data by searching for anatomical terms, taxa, or gene names. The expert system enables the broad scale analysis of phenotypic variation across taxa and the co-analysis of these evolutionarily variable features with the phenotypic mutants of model organisms. The Knowledgebase currently contains 565,158 phenotype statements about 2,527 taxa, sourced from 57 publications, as well as 38,189 phenotype statements about 4,727 genes, retrieved from ZFIN. 2013-01-26. | fish, gene, anatomy, model organism, ostariophysan, phenotype, taxis, ontology, anatomy, variation, taxon, genetic, evolution, development, web service, source code |
uses: Teleost Anatomy Ontology is related to: Zebrafish Information Network (ZFIN) is related to: Catalog of Fishes is related to: FishBase is related to: AmphibiaWeb is related to: NCBI Taxonomy is related to: Catalogue of Life has parent organization: NESCent - National Evolutionary Synthesis Center has parent organization: Phenoscape is parent organization of: Teleost Taxonomy Ontology |
NSF DBI-1062404; NSF DBI-1062542; NSF EF-0905606; NSF BDI-0641025; NSF EF-0423641 |
PMID:22736877 PMID:20505755 |
Free, Freely available | nif-0000-24925 | SCR_002821 | 2026-02-14 02:06:09 | 14 | ||||||
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Familial Hypertrophic Cardiomyopathy DNA Mutation Database Resource Report Resource Website 1+ mentions |
Familial Hypertrophic Cardiomyopathy DNA Mutation Database (RRID:SCR_002346) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The aim of this locus-specific mutation database was to provide an online resource that contains summarized and updated information on familial hypertrophic cardiomyopathy (FHC)-associated mutations and related data, for researchers and clinicians. It also serves as a means of publishing previously unpublished data, which could be of value in understanding genotype/phenotype correlations. This database contains mutations in various genes known to cause familial hypertrophic cardiomyopathy, a genetic disorder associated with defects in the sarcomere [1]. Only gene symbols approved by HUGO are used and mutations are reported in accordance with guidelines recommended by the Mutation Database Initiative of HUGO and EBI. | familial, gene, gene-, genetic, cardiomyopathy, clinic, correlation, defect, disorder, genotype, hypertrophic, locus, mutation, or disease- specific databases, phenotype, research, sarcomere, system- | PMID:10502780 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21151 | SCR_002346 | FHC Mutation Database | 2026-02-14 02:06:07 | 2 | ||||||||
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Directory of Health Organizations Online Resource Report Resource Website 1+ mentions |
Directory of Health Organizations Online (RRID:SCR_002331) | DIRLINE | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented July 15, 2016. Database containing location and descriptive information about a wide variety of information resources including organizations, research resources, projects, and databases concerned with health and biomedicine. This information may not be readily available in bibliographic databases. Each record may contain information on the publications, holdings, and services provided. These information resources fall into many categories including federal, state, and local government agencies; information and referral centers; professional societies; self-help groups and voluntary associations; academic and research institutions and their programs; information systems and research facilities. Topics include HIV/AIDS, maternal and child health, most diseases and conditions including genetic and other rare diseases, health services research and technology assessment. DIRLINE can be searched using subject words (such as disease or condition) including Medical Subject Headings (MeSH) or for the name or location of a resource. It now offers an A to Z list of over 8,500 organizations. | genetic, aids, biomedicine, child, condition, disease, health, hiv, maternal, medicine, public health | has parent organization: National Library of Medicine | NLM N01LM023524 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21122 | SCR_002331 | Directory of Information Resources Online | 2026-02-14 02:05:39 | 1 | ||||||
|
DogMap Resource Report Resource Website |
DogMap (RRID:SCR_002332) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. An international collaboration between 46 labs from 20 different countries towards a low resolution canine marker map under the auspices of the International Society for Animal Genetics (ISAG). The map under development should achieve a resolution of about 20 cM and some of the markers should be mapped physically. The participants have agreed to use microsatellites as markers on a common panel of reference families which will provide the backbone of the marker map. It is foreseen to also include type I markers in the mapping effort and to produce cosmid derived microsatellites for physical mapping. For this purpose part of the effort focuses on the standardization of the canine karyotype. Special attention is payed to hereditary diseases where efforts are under way to establish resource families either by collecting families or by specific breeding. A point of emphasis of the DogMap project is the setting up of an internationally accessible database for handling the mapping data. The structure of the DogMap collaboration includes a managing committee and scientific advisers. The managing committee is responsible for the overall coordination of the activities within the collaboration, for the dissemination of relevant information to all of the participants and for the representation of DogMap outside the collaboration., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | family, genetic, animal, breeding, canine, development, disease, dog, genomic, hereditary, karyotype, map, mapping, marker, microsatellite, model organisms and comparative genomics databases, physical | has parent organization: University of Basel; Basel; Switzerland | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21123 | SCR_002332 | DogMap | 2026-02-14 02:06:06 | 0 | ||||||||
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SHEsis: Analysis Tools For Random Samples Resource Report Resource Website 50+ mentions |
SHEsis: Analysis Tools For Random Samples (RRID:SCR_002958) | SHEsis | data analysis service, production service resource, service resource, analysis service resource | A powerful web-based platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci. | analysis, disequilibrium, haplotype, genetic, association, polymorphism, locus, linkage disequilibrium | has parent organization: Shanghai Jiao Tong University; Shanghai; China | Major State Basic Research Development program of China ; National High Technology Research and Development Program of China |
PMID:19290020 PMID:15740637 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30105 | http://analysis.bio-x.cn/myAnalysis.php | SCR_002958 | 2026-02-14 02:06:10 | 80 | |||||
|
DepressionTools.org Clinical Significance Calculator Resource Report Resource Website |
DepressionTools.org Clinical Significance Calculator (RRID:SCR_003873) | DepressionTools.org | data analysis service, production service resource, service resource, analysis service resource | Online instrument that estimates whether a biomarker predicting outcome of depression treatment is likely to be clinically significant. | biomarker, clinical significance, treatment, clinical, outcome, software as a service, binary, genetic, continuous, effect size |
uses: Hamilton Rating Scale for Depression has parent organization: NEWMEDS |
Depressive Disorder | PMID:22256872 | nlx_158198 | SCR_003873 | Clinical Significance Calculator | 2026-02-14 02:06:16 | 0 | ||||||
|
University of California at Davis Mutant Mouse Resource and Research Center Resource Report Resource Website 100+ mentions |
University of California at Davis Mutant Mouse Resource and Research Center (RRID:SCR_016448) | MMRRC UCD, UCD MMRRC | biomaterial supply resource, material resource | Center that imports, archives, maintains, and distributes mutant mouse alleles as live mice, frozen germplasm, stem cells, and molecular vectors for use in biomedical research. The MMRRC Davis receives transgenics, knockouts, and other kinds of mutant mouse lines at no cost to the donor, and after re-derivation and cryopreservation, distributes breeding stock, germplasm, cells, or tissues of genetically-defined and pathogen-free mice for a small fee to requesting investigators. | ABRF, USEDit, mouse, mice, research, genetic, mutant, mutation, transgenic, knockout, research, animal, behavior |
is listed by: ABRF CoreMarketplace is related to: USEDit is organization facet of: Mutant Mouse Resource and Research Center |
NIH Office of the Director U42 OD012210; NIH Office of the Director U42 OD010983 |
ABRF_1650 | https://coremarketplace.org/?FacilityID=1650&citation=1 | SCR_016448 | Mutant Mouse Resource and Research Center UC Davis, Davis MMRRC, UCD Mutant Mouse Resource and Research Center, UC Davis MMRRC, UC Davis Mutant Mouse Resource and Research Center, Mutant Mouse Resource and Research Center - UCD, Mutant Mouse Resource and Research Center - University of California at Davis, California MMRRC | 2026-02-14 02:07:28 | 186 | ||||||
|
Mutant Mouse Resource and Research Center - University of Missouri Resource Report Resource Website 50+ mentions |
Mutant Mouse Resource and Research Center - University of Missouri (RRID:SCR_016447) | UM MMRRC, MMRRC UM | biomaterial supply resource, material resource | Center that supplies mice and conducts research projects focused on the role of mice as animal models. Some of these projects include refinement of models to ensure study reproducibility, as well as development and improvement of economical methods for cryopreservation of mouse strains. | mice, mouse, supply, genetic, transgenic, knockout, research, mutant | is organization facet of: Mutant Mouse Resource and Research Center | NIH Office of the Director U42 OD010918 | SCR_016447 | Mutant Mouse Resource and Research Center - UM, UM Mutant Mouse Resource and Research Center, University of Missouri MMRRC, MMRRC University of Missouri | 2026-02-14 02:07:18 | 53 | ||||||||
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ReBATE Resource Report Resource Website |
ReBATE (RRID:SCR_017139) | software resource, software toolkit | Open source software Python package to compare relief based feature selection algorithms used in data mining. Used for feature selection in any bioinformatics problem with potentially predictive features and target outcome variable, to detect feature interactions without examination of all feature combinations, to detect features involved in heterogeneous patterns of association such as genetic heterogeneity . | compare, relief, feature, algorithm, data, mining, variable, heterogeneous, pattern, genetic | has parent organization: University of Pennsylvania; Philadelphia; USA | NIAID AI116794; NIDDK DK112217; NIEHS ES013508; NEI EY022300; NHLBI HL134015; NLM LM009012; NLM LM010098; NLM LM011360; NCATS TR001263; Warren Center for Network and Data Science |
PMID:30030120 | Free, Available for download, Freely available | https://epistasislab.github.io/ReBATE/ | SCR_017139 | Relief Based Algorithm Training Environment | 2026-02-14 02:07:01 | 0 | ||||||
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Referral Center for Animal Models of Human Genetic Diseases Resource Report Resource Website |
Referral Center for Animal Models of Human Genetic Diseases (RRID:SCR_016453) | biomaterial supply resource, material resource | Center that aims to discover, characterize, maintain breeding colonies, and make available dog and cat models with hereditary diseases homologous to those found in human patients that can be used to translate preclinical trials from kennel to clinic. The animal models represent true orthologs of their respective human disease, involving defects in homologous genes resulting in similar molecular, biochemical, pathological, and clinical phenotype as in human patients. | animal, dog, cat, disease, homologue, genetic, colony, breed, model | has parent organization: University of Pennsylvania; Philadelphia; USA | NIH Office of the Director P40 OD011189 | SCR_016453 | University of Pennsylvania School of Veterinary Medicine Referral Center for Animal Models of Human Genetic Diseases, UPenn Referral Center for Animal Models of Human Genetic Diseases, PennVet Referral Center for Animal Models of Human Genetic Diseases | 2026-02-14 02:07:18 | 0 | |||||||||
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FASTLINK Resource Report Resource Website 50+ mentions |
FASTLINK (RRID:SCR_009177) | FASTLINK | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, vms, ms-dos, .. and can also run in parallel on shared memory unix machines |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: OMICtools |
PMID:8807326 | OMICS_28405, nlx_154309 | https://sources.debian.org/src/fastlink/ | SCR_009177 | faster version of LINKAGE LINKAGE | 2026-02-14 02:06:46 | 58 | ||||||
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FASTEHPLUS Resource Report Resource Website |
FASTEHPLUS (RRID:SCR_009176) | FASTEHPLUS | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 7, 2016. | gene, genetic, genomic, c, ms-windows, unix, dec, osf, solaris | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154308 | http://www.mrc-epid.cam.ac.uk/Personal/jinghua.zhao/software/ | SCR_009176 | EHPLUS, faster EH-PLUS EH | 2026-02-14 02:07:14 | 0 | ||||||
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ERPA Resource Report Resource Website 1+ mentions |
ERPA (RRID:SCR_009173) | ERPA | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application for non-parametric analysis (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154302 | SCR_009173 | Extended Relative Pair Analysis | 2026-02-14 02:06:46 | 7 | |||||||
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EXOMEPICKS Resource Report Resource Website 1+ mentions |
EXOMEPICKS (RRID:SCR_009174) | EXOMEPICKS | software resource, software application | Software application that suggests individuals to be sequenced in a large pedigree. ExomePicks assumes that a genotyping chip or another cost effective means will be used to determine IBD sharing in the pedigree and that, subsequently, one would like to sequence a minimal number of individuals and use their sequences together with IBD information to deduce the sequence of other individuals in the pedigree. We are currently using it in the context of whole exome and whole genome sequencing studies to pick individuals to be sequenced from large family collections. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154306, biotools:exomepicks | https://bio.tools/exomepicks | SCR_009174 | 2026-02-14 02:07:09 | 6 | ||||||||
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EMLD Resource Report Resource Website 1+ mentions |
EMLD (RRID:SCR_009171) | EMLD | software resource, software application | Software application to calculate pair-wise linkage disequilibrium based on SNP genotype data from unrelated individuals. EM algorithm is used to estimate pair-wise haplotype frequencies. The output file is in the format of input file for GOLD program, thus it can be directly plug into GOLD to get LD plots. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, unix, ms-windows | is listed by: Genetic Analysis Software | nlx_154298 | http://epi.mdanderson.org/~qhuang/Software/pub.htm | SCR_009171 | EM estimation of haplotype frequencies and LD calculation | 2026-02-14 02:07:00 | 4 | |||||||
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EPDT Resource Report Resource Website 1+ mentions |
EPDT (RRID:SCR_009172) | EPDT | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that for detecting linkage/disequilibrium signals # between genetic markers and disease loci, particularly if only one # or a few large pedigrees are available. The strategy differs from # conventional approaches that require at least a moderate number of # families to attain adequate statistical power. The proposed testing # procedure is advantageous in that it provides high statistical power # coupled with reduced sample collection. Furthermore, the proposed # method avoids problems such as potential population stratification # and genetic heterogeneity, and is robust with respect to misspecification # of phenotype. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154301 | SCR_009172 | Extended Pedigree Disequilibrium Test | 2026-02-14 02:07:14 | 1 | |||||||
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EH Resource Report Resource Website |
EH (RRID:SCR_009168) | EH | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, ms-dos, unix | is listed by: Genetic Analysis Software | nlx_154291 | SCR_009168 | FASTEHPLUS, EHP, Estimating Haplotype-frequencies EHPLUS | 2026-02-14 02:07:14 | 0 |
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