Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
NeuronDB Resource Report Resource Website 10+ mentions |
NeuronDB (RRID:SCR_003105) | NeuronDB | data analysis service, analysis service resource, database, production service resource, service resource, data or information resource | Database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments. | NMDA, LTP, brain, cellular, cerebellum, cortex, dendrite, human, invertebrate, ion channel, molecular, mouse, neuroinformatics, neuron, neuronal property, neurotransmitter receptor, neurotransmitter substance, olfactory, physiology, rat, receptor, retina, voltage gated conductance, rodent, rat, non-human animal |
is used by: NIF Data Federation is listed by: Biositemaps is related to: ModelDB is related to: Integrated Manually Extracted Annotation has parent organization: Yale University; Connecticut; USA works with: MicrocircuitDB |
Human Brain Project ; Multidisciplinary University Research Initiative (MURI) ; NIDCD RO1 DC 009977 |
PMID:17510162 PMID:10223520 |
Free, Available for download, Freely available | nif-0000-00054 | https://bioregistry.io/registry/neurondb | SCR_003105 | Neuron DB, Neuron database, Neuron DataBase | 2026-02-16 09:45:58 | 10 | ||||
|
Brainscape Resource Report Resource Website 1+ mentions |
Brainscape (RRID:SCR_002962) | Brainscape | image repository, data analysis service, analysis service resource, data repository, database, storage service resource, production service resource, service resource, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 23, 2013. Database for resting state functional connectivity studies. Functional connectivity has shown tremendous promise in mapping the intrinsic functional topography of the brain, evaluating neuroanatomical models, and investigating neurological and psychiatric disease. Brainscape includes a repository of public and private data and an analysis engine for exploring the correlation structure of spontaneous fluctuations in the fMRI BOLD signal. (DICOM data is the image format that can be uploaded.) With Brainscape you can upload, analyze, and share your own data. You can search for, download, and analyze studies in the repository of shared data. The analysis engine works by selecting one or more studies, typing in the coordinates of a brain region of interest, and the seed-region correlation engine computes the correlation structure across the whole brain. (T1, T2 and EPI data are the scan types Brainscape can process.) You decide who can access your data. You can keep it to yourself, share with select colleagues, or share it with everyone. The Brainscape database and analysis tools are open source and freely available. | functional connectivity, fmri bold signal, brain, neuroanatomy, region of interest, resting state, fmri, analysis, processing, dicom, dicom data, t1, t2, epi data, 4-dimensional floating point, raw, statistical comparison, functional topography, neurological, psychiatric, disease, mri, functional, statistical operation, correlation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: University of California at San Diego; California; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00501 | SCR_002962 | 2026-02-16 09:46:04 | 2 | ||||||||
|
CBU Imaging Wiki Resource Report Resource Website 50+ mentions |
CBU Imaging Wiki (RRID:SCR_003014) | CBU Imaging Wiki | data or information resource, topical portal, portal | Portal where neuroimaging studies are carried out using a Siemens 3T Tim Trio Magnetic Resonance Imaging (or MRI) scanner that is wholly dedicated to studies in Cognitive Neuroscience. From emotions and memories to language and learning, functional neuroimaging is being applied in many different areas of Cognitive Neuroscience. In many cases, this research relies upon support from healthy volunteers although neuroimaging studies are also being conducted in various clinical populations, including depression, anxiety, Parkinson's disease and Alzheimer's disease. | neuroimaging, cognitive neuroscience, mri, scanner, neuroscience, emotion, memory, language, learning, functional neuroimaging, clinical, population, human, analysis, software, disease, brain, imaging, fmri, cognition |
is related to: FslAtlasIntegration has parent organization: MRC Cognition and Brain Sciences Unit is parent organization of: MNI brain and the Talairach atlas is parent organization of: MNI brain and the Talairach atlas |
Depressive Disorder, Anxiety, Parkinson's disease, Alzheimer's disease | MRC | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30307 | SCR_003014 | CBUImaging, MRC CBU Imaging Wiki, MRC Cognition and Brain Sciences Unit Imaging Wiki, Cognition and Brain Sciences Unit Imaging Wiki | 2026-02-16 09:45:53 | 58 | |||||
|
BMAP cDNA Resources Resource Report Resource Website 1+ mentions |
BMAP cDNA Resources (RRID:SCR_002973) | BMAP Resources | material service resource, resource, biomaterial manufacture, topical portal, portal, production service resource, service resource, data or information resource | As part of BMAP gene discovery efforts, mouse brain cDNA libraries and Expressed Sequence Tags (ESTs) have been generated. Through this project a BMAP mouse brain UniGene set consisting of over 24,000 non-redundant members of unique clusters has been developed from EST sequencing of more than 50,000 cDNA clones from 10 regions of adult mouse brain, spinal cord, and retina (http://brainEST.eng.uiowa.edu/). In 2001, NIMH along with NICHD, NIDDK, and NIDA, awarded a contract to the University of Iowa ( M.B. Soares, PI) to isolate full-length cDNA clones corresponding to genes expressed in the developing mouse nervous system and determine their full-coding sequences. The BMAP mouse brain EST sequences can be accessed at NCBI's dbEST database (http://www.ncbi.nlm.nih.gov/dbEST/). Arrayed sets of BMAP mouse brain UniGenes and cDNA libraries, and individual BMAP cDNA clones can be purchased from Open Biosystems, Huntsville, AL (http://www.openbiosystems.com | brain, spinal cord, retina, gene, cdna, library, est, cluster, clone, nervous system, dbest, database, gene discovery, cdna library, expressed sequence tag, coding sequence, adult |
is related to: Nucleotide database is related to: Open Biosystems has parent organization: BMAP - Brain Molecular Anatomy Project |
NINDS ; NICHD ; NIDDK ; NIDA ; NIMH N01 MH80014 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30154 | SCR_002973 | Brain Molecular Anatomy Project cDNA Resources | 2026-02-16 09:46:04 | 2 | ||||||
|
Blue Brain Project Resource Report Resource Website 10+ mentions |
Blue Brain Project (RRID:SCR_002994) | Blue Brain | data or information resource, topical portal, portal | A Swiss-led project with the aim of reverse engineering the mammalian brain and achieving a complete virtual human brain. The researchers have demonstrated the validity of their method by developing a realistic model of a rat cortical column, consisting of about 10,000 neurons. The eventual goal is to simulate systems of millions and hundreds of millions of neurons. The virtual brain will be an exceptional tool giving neuroscientists a new understanding of the brain and a better understanding of neurological diseases. In five years of work, Henry Markram's team has perfected a facility that can create realistic models of one of the brain's essential building blocks. This process is entirely data driven and essentially automatically executed on the supercomputer. Meanwhile the generated models show a behavior already observed in years of neuroscientific experiments. These models will be basic building blocks for larger scale models leading towards a complete virtual brain. | brain, neuron, microcircuit, simulation, cortex, cortical column, model |
is related to: NeuroCurator has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland is parent organization of: ChannelPedia provides: Blue Brain Cell Atlas |
Neurological disease | nif-0000-30208 | SCR_002994 | Bluebrain | 2026-02-16 09:45:58 | 16 | |||||||
|
CCHMC Pediatric Brain Templates Resource Report Resource Website 1+ mentions |
CCHMC Pediatric Brain Templates (RRID:SCR_003276) | Pediatric Brain Templates | image collection, reference atlas, data or information resource, atlas | Brain imaging data collected from a large population of normal, healthy children that have been used to construct pediatric brain templates, which can be used within statistical parametric mapping for spatial normalization, tissue segmentation and visualization of imaging study results. The data has been processed and compiled in various ways to accommodate a wide range of possible research approaches. The templates are made available free of charge to all interested parties for research purposes only. When processing imaging data from children, it is important to take into account the fact that the pediatric brain differs significantly from the adult brain. Therefore, optimized processing requires appropriate reference data be used because adult reference data will introduce a systematic bias into the results. We have shown that, in the in the case of spatial normalization, the amount of non-linear deformation is dramatically less when a pediatric template is used (left, see also HBM 2002; 17:48-60). We could also show that tissue composition is substantially different between adults and children, and more so the younger the children are (right, see also MRM 2003; 50:749-757). We thus believe that the use of pediatric reference data might be more appropriate. | brain, child, human, normal, pediatric, spatial normalization, template, tissue segmentation, visualization, young human, neuroimaging | is related to: SPM | Normal, Healthy | Free, Freely available | nif-0000-01274 | https://jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=SPM;981fd215.02 | SCR_003276 | 2026-02-16 09:46:04 | 3 | ||||||
|
Research Network in Early Experience and Brain Development Resource Report Resource Website 10+ mentions |
Research Network in Early Experience and Brain Development (RRID:SCR_003271) | Research Network on Early Experience and Brain Development | image collection, data or information resource, topical portal, portal | Portal on how the experiences of early childhood are incorporated into the structures of the developing brain, and how, in turn, those changes in the structures of the brain influence behavior. The network explores how knowledge of brain development can guide us in understanding of behavioral development and vice versa. It focuses specifically on sensitive periods and neural plasticity, the reciprocal phenomena whereby (a) the brain is negatively affected if certain experiences fail to occur within a certain time period, and (b) the brain is altered by experience at virtually any point in the life span. Here we consider not only how the structure of experience is incorporated into the structure of the brain, but also how this knowledge can influence the decisions we make about intervening in the lives of children. Research and other projects conducted by the Network fall into four broad categories: * Effects of early experience on brain development * New methods for studying brain-behavior relations * Comparative studies of early brain-behavioral development * Impact on public policy: Educating educators and the media RESOURCES NimStim Face Stimulus Set The Research Network on Early Experience and Brain Development has developed a battery of 646 facial expression stimuli for use in its own and other studies of face and emotion recognition. Images include the following expressions, displayed by a variety of models of various genders and races: fearful, happy, sad, angry, surprised, calm, neutral, disgusted. They are making these stimuli available to the public free of charge with registration and acceptance of the terms and conditions to use the stimulus set. | brain, development, developing brain, behavior, early experience, brain development, facial expression stimuli, emotion, stimuli, facial expression, young human, child |
has parent organization: University of California at Davis; California; USA has parent organization: University of Pittsburgh; Pennsylvania; USA has parent organization: Oregon Health and Science University; Oregon; USA has parent organization: University of California at San Francisco; California; USA has parent organization: University of Maryland; Maryland; USA has parent organization: Stanford University; Stanford; California has parent organization: Vanderbilt University; Tennessee; USA has parent organization: Brandeis University; Massachusetts; USA has parent organization: University of California at Los Angeles; California; USA has parent organization: Tulane University; Louisiana; USA has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
James S. McDonnell Foundation ; MacArthur Foundation |
Free, Freely available | nif-0000-31447 | http://www.macbrain.org/faces/indexhtm | SCR_003271 | Research Network in Early Experience Brain Development | 2026-02-16 09:46:04 | 45 | |||||
|
VisiGene Image Browser Resource Report Resource Website 50+ mentions |
VisiGene Image Browser (RRID:SCR_003341) | VisiGene | image repository, data analysis service, analysis service resource, image collection, data repository, database, storage service resource, production service resource, service resource, data or information resource | Virtual microscope for viewing in situ images that show where a gene is used in an organism, sometimes down to cellular resolution. The user can examine cell-by-cell as well as tissue-by-tissue expression patterns. Users can retrieve images that meet specific search criteria, then interactively zoom and scroll across the collection. Image set contributions are welcome. The following image collections are currently available for browsing: * High-quality high-resolution images of eight-week-old male mouse sagittal brain slices with reverse-complemented mRNA hybridization probes from the Allen Brain Atlas, courtesy of the Allen Institute for Brain Science * Mouse in situ images from the Jackson Lab Gene Expression Database (GXD) at MGI * Transcription factors in mouse embryos from the Mahoney Center for Neuro-Oncology * Mouse head and brain in situ images from NCBI''''s Gene Expression Nervous System Atlas (GENSAT) database * Xenopus laevis in situ images from the National Institute for Basic Biology (NIBB) XDB project | molecular neuroanatomy resource, midbrain, brain, in situ, gene, theiler stage, visualization, cellular resolution, mrna hybridization, in situ hybridization, male, nieuwkoop, faber stage, gene expression, embryonic mouse, adult mouse |
is related to: Gene Expression Database is related to: Allen Institute for Brain Science is related to: Gene Expression Nervous System Atlas has parent organization: University of California at Santa Cruz; California; USA |
PMID:18996895 PMID:17142222 |
Free, Freely available | nif-0000-00198 | SCR_003341 | 2026-02-16 09:46:06 | 58 | |||||||
|
Brain Atlas of the Mozambique Tilapia Oreochromis mossambicus Resource Report Resource Website |
Brain Atlas of the Mozambique Tilapia Oreochromis mossambicus (RRID:SCR_003501) | Tilapia Brain Atlas | image repository, atlas, data repository, storage service resource, service resource, data or information resource | Digital three-dimensional MRI atlas of the Mozambique tilapia brain, supported by Nissl staining. Images were viewed and analyzed in all orientations (transverse, sagittal, and horizontal) and manually labelled to reveal structures in the olfactory bulb, telencephalon, diencephalon, optic tectum, and cerebellum. The MRI atlas data (16-bit int) and delineation data (8-bit int) are provided in Raw data (file_name.raw), Amira format (file_name.am) and in Analyze format (file_name.img and file_name.hdr). | mri, brain, head, computed tomography, cichlid fish, nissl stain, transverse, sagittal, horizontal, olfactory bulb, telencephalon, diencephalon, optic tectum, cerebellum, fish model, histology, 3d, nuclei, delineation, sequence atlas, resolution atlas, dimensions atlas, skull | has parent organization: Instituto Superior de Psicologia Aplicada; Lisbon; Portugal | PMID:22984463 | Account required | nlx_157637 | SCR_003501 | Mozambique Tilapia Brain Atlas | 2026-02-16 09:46:07 | 0 | ||||||
|
MGH-USC Human Connectome Project Resource Report Resource Website 100+ mentions |
MGH-USC Human Connectome Project (RRID:SCR_003490) | MGH/UCLA HCP | material service resource, instrument manufacture, portal, production service resource, service resource, data or information resource | A multi-center project comprising two distinct consortia (Mass. Gen. Hosp. and USC; and Wash. U. and the U. of Minn.) seeking to map white matter fiber pathways in the human brain using leading edge neuroimaging methods, genomics, architectonics, mathematical approaches, informatics, and interactive visualization. The mapping of the complete structural and functional neural connections in vivo within and across individuals provides unparalleled compilation of neural data, an interface to graphically navigate this data and the opportunity to achieve conclusions about the living human brain. The HCP is being developed to employ advanced neuroimaging methods, and to construct an extensive informatics infrastructure to link these data and connectivity models to detailed phenomic and genomic data, building upon existing multidisciplinary and collaborative efforts currently underway. Working with other HCP partners based at Washington University in St. Louis they will provide rich data, essential imaging protocols, and sophisticated connectivity analysis tools for the neuroscience community. This project is working to achieve the following: 1) develop sophisticated tools to process high-angular diffusion (HARDI) and diffusion spectrum imaging (DSI) from normal individuals to provide the foundation for the detailed mapping of the human connectome; 2) optimize advanced high-field imaging technologies and neurocognitive tests to map the human connectome; 3) collect connectomic, behavioral, and genotype data using optimized methods in a representative sample of normal subjects; 4) design and deploy a robust, web-based informatics infrastructure, 5) develop and disseminate data acquisition and analysis, educational, and training outreach materials. | human, structural, functional, neural, white matter, fiber, brain, in vivo, genomic, neuroimaging, visualization, neuroanatomy, genotype, connectivity, connectivity model, neural pathway, phenomic, connectomics, quantification, scanner, eeg, meg, shape analysis, spatial transformation, diffusion spectrum, q-ball, tensor metric, fiber tracking, connectome, behavior, scanner, web resource, diffusion spectrum, q-ball, tensor metric, quantification, shape analysis, spatial transformation, fiber tracking, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: Laboratory of Neuro Imaging has parent organization: Harvard Medical School; Massachusetts; USA has parent organization: NIH Human Connectome Project is parent organization of: USC Multimodal Connectivity Database |
Normal | NIH ; NIH Blueprint for Neuroscience Research |
Open unspecified license, (BSD/MIT-Style), LONI Software License, Public Domain | nif-0000-35789 | http://www.nitrc.org/projects/hcp_mgh-ucla | SCR_003490 | Harvard/MGH-UCLA Human Connectome Project, Harvard/MGH-UCLA Consortium: Human Connectome Project, HCP Harvard/MGH-UCLA, MGH/UCLA Consortium: Human Connectome Project | 2026-02-16 09:46:13 | 165 | ||||
|
brainfacts.org Resource Report Resource Website 1+ mentions |
brainfacts.org (RRID:SCR_003514) | narrative resource, training material, topical portal, portal, data or information resource, blog | A web portal that aggregates information and educational materials about the brain and brain diseases. Resources such as videos, key brain concepts, and hands-on activities may be used and shared with the public. | brain, nervous system, neuroscience, research, educator, k-12, video, autism, parkinson's disease, public material |
is related to: SfN Brain Briefings has parent organization: Society for Neuroscience |
Parkinson's disease, Autism | Kavli Foundation ; Gatsby Charitable Foundation |
Public | nlx_144565 | SCR_003514 | brain facts, brainfacts, BrainFacts.org | 2026-02-16 09:46:02 | 8 | ||||||
|
NIH MRI Study of Normal Brain Development Resource Report Resource Website 1+ mentions |
NIH MRI Study of Normal Brain Development (RRID:SCR_003394) | Pediatric MRI Study | experimental protocol, data or information resource, data set, narrative resource | Data sets of clinical / behavioral and image data are available for download by qualified researchers from a seven year, multi-site, longitudinal study using magnetic resonance technologies to study brain maturation in healthy, typically-developing infants, children, and adolescents and to correlate brain development with cognitive and behavioral development. The information obtained in this study is expected to provide essential data for understanding the course of normal brain development as a basis for understanding atypical brain development associated with a variety of developmental, neurological, and neuropsychiatric disorders affecting children and adults. This study enrolled over 500 children, ranging from infancy to young adulthood. The goal was to study each participant at least three times over the course of the project at one of six Pediatric Centers across the United States. Brain MR and clinical/behavioral data have been compiled and analyzed at a Data Coordinating Center and Clinical Coordinating Center. Additionally, MR spectroscopy and DTI data are being analyzed. The study was organized around two objectives corresponding to two age ranges at the time of enrollment, each with its own protocols. * Objective 1 enrolled children ages 4 years, 6 months through 18 years (total N = 433). This sample was recruited across the six Pediatric Study Centers using community based sampling to reflect the demographics of the United States in terms of income, race, and ethnicity. The subjects were studied with both imaging and clinical/behavioral measures at two year intervals for three time points. * Objective 2 enrolled newborns, infants, toddlers, and preschoolers from birth through 4 years, 5 months, who were studied three or more times at two Pediatric Study Centers at intervals ranging from three months for the youngest subjects to one year as the children approach the Objective 1 age range. Both imaging and clinical/behavioral measures were collected at each time point. Participant recruitment used community based sampling that included hospital venues (e.g., maternity wards and nurseries, satellite physician offices, and well-child clinics), community organizations (e.g., day-care centers, schools, and churches), and siblings of children participating in other research at the Pediatric Study Centers. At timepoint 1, of those enrolled, 114 children had T1 scans that passed quality control checks. Staged data release plan: The first data release included structural MR images and clinical/behavioral data from the first assessments, Visit 1, for Objective 1. A second data release included structural MRI and clinical/behavioral data from the second visit for Objective 1. A third data release included structural MRI data for both Objective 1 and 2 and all time points, as well as preliminary spectroscopy data. A fourth data release added cortical thickness, gyrification and cortical surface data. Yet to be released are longitudinally registered anatomic MRI data and diffusion tensor data. A collaborative effort among the participating centers and NIH resulted in age-appropriate MR protocols and clinical/behavioral batteries of instruments. A summary of this protocol is available as a Protocol release document. Details of the project, such as study design, rationale, recruitment, instrument battery, MRI acquisition details, and quality controls can be found in the study protocol. Also available are the MRI procedure manual and Clinical/Behavioral procedure manuals for Objective 1 and Objective 2. | young human, child, pediatric, experimental protocol, brain, brain development, development, mri, minc, clinical, behavior, anatomical mri, diffusion tensor imaging, mr spectroscopy, adolescent, clinical data, behavioral data, data visualization software, clinical measure, behavioral measure, physical neurological examination, behavioral rating, neuropsychological testing, structured psychiatric interview, hormonal measure, image collection, neonate, clinical neuroinformatics, dicom, minc2, magnetic resonance, nifti |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: NIH Data Sharing Repositories is related to: NIH Data Sharing Repositories has parent organization: National Institutes of Health |
Healthy, Normal | NICHD ; NIDA ; NIMH ; NINDS ; NIH Blueprint for Neuroscience Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00201 | http://www.bic.mni.mcgill.ca/nihpd/info/, https://nihpd.crbs.ucsd.edu/nihpd/info/index.html | SCR_003394 | NIH Pediatric MRI Data Repository, Pediatric MRI Data Repository | 2026-02-16 09:46:00 | 6 | ||||
|
Program on Ontologies of Neural Structures Resource Report Resource Website |
Program on Ontologies of Neural Structures (RRID:SCR_003549) | PONS | narrative resource, topical portal, portal, data or information resource, standard specification | Program consisting of three Task Forces and one Working Group to promote data exchange and integration in the neurosciences by developing terminology standards and formal ontologies for neural structures. Closely linked to the Program on Digital Brain Atlasing, the Program aims to establish a structured lexicon for the translation and definition of terms describing neural structures at multiple levels of granularity. The three Task Forces and one Working Group involved in the PONS effort: * Structural lexicon * Neuron registry * Representation and deployment * KnowledgeSpace Working Group Structural lexicon, Neuron registry, Representation and deployment, and KnowledgeSpace Working Group. | neural structure, lexicon, neuroanatomy, brain, metadata, brain region, data sharing, neuron, interoperability |
is related to: NeuroLex is related to: Neuron Registry Curator Interface has parent organization: International Neuroinformatics Coordinating Facility |
nlx_157669 | SCR_003549 | INCF Program on Ontologies of Neural Structures | 2026-02-16 09:46:10 | 0 | ||||||||
|
Common Upper Mammalian Brain Ontology Resource Report Resource Website |
Common Upper Mammalian Brain Ontology (RRID:SCR_003629) | CUMBO | ontology, data or information resource, controlled vocabulary | Ontology of formal definitions (i.e., machine processable) for the types of structures commonly described in neuroanatomy. | neuroanatomy, brain |
is related to: Linked Neuron Data has parent organization: International Neuroinformatics Coordinating Facility has parent organization: NeuroLex |
nlx_157809 | http://neurolex.org/wiki/Cumbo_terms | SCR_003629 | INCF-CUMBO, Common Upper Mammalian Brain Ontology (CUMBO) | 2026-02-16 09:46:12 | 0 | |||||||
|
Accelerating Medicines Partnership - Alzheimers Resource Report Resource Website |
Accelerating Medicines Partnership - Alzheimers (RRID:SCR_003742) | AMP Alzheimer's, AMP Alzheimer's Disease | data or information resource, organization portal, consortium, portal | The Alzheimer's disease arm of the Accelerating Medicines Partnership (AMP) that will identify biomarkers that can predict clinical outcomes, conduct a large scale analysis of human AD patient brain tissue samples to validate biological targets, and to increase the understanding of molecular pathways involved in the disease to identify new potential therapeutic targets. The initiative will deposit all data in a repository that will be accessible for use by the biomedical community. The five year endeavor, beginning in 2014, will result in several sets of project outcomes. For the biomarkers project, tau imaging and EEG data will be released in year two, as baseline data becomes available. Completed data from the randomized, blinded trials will be added after the end of the five year studies. This will include both imaging data and data from blood and spinal fluid biomarker studies. For the network analysis project, each project will general several network models of late onset AD (LOAD) and identify key drivers of disease pathogensis by the end of year three. Years four and five will be dedicated to validating the novel targets and refining the network models of LOAD, including screening novel compounds or drugs already in use for other conditions that may have the ability to modulate the likely targets. | drug, drug development, biomarker, data sharing, consortium, disease target, drug design, brain tissue, brain, tissue, clinical, neuroimaging, tau, blood, cerebral spinal fluid, eeg, clinical trial, amyloid beta, neurofibrillary tangle |
is listed by: Consortia-pedia is related to: Accelerating Medicines Partnership Autoimmune Diseases of Rheumatoid Arthritis and Lupus is related to: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) is related to: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) is related to: Accelerating Medicines Partnership Autoimmune Diseases of Rheumatoid Arthritis and Lupus has parent organization: Foundation for the National Institutes of Health has parent organization: Accelerating Medicines Partnership |
NIH ; Industry partners |
nlx_157974 | SCR_003742 | Accelerating Medicines Partnership - Alzheimer's Disease, Accelerating Medicines Partnership - Alzheimer's, Accelerating Medicines Partnership Alzheimer's Disease | 2026-02-16 09:46:14 | 0 | |||||||
|
NeuroVault Resource Report Resource Website 100+ mentions |
NeuroVault (RRID:SCR_003806) | service resource, data repository, storage service resource | Data repository where researchers can publicly store and share unthresholded statistical brain activation maps produced by MRI and PET studies. | neuroimaging, fmri, mri, functional mri assay, pet, brain activation map, brain, statistical map, neuroimaging repository |
uses: NeuroSynth is used by: NIF Data Federation is used by: Integrated Datasets is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Stanford Center for Reproducible Neuroscience |
International Neuroinformatics Coordinating Facility ; Max-Planck-Gesellschaft ; Max Planck Institute for Human Cognitive and Brain Sciences; Leipzig; Germany |
Creative Commons Zero License | nlx_158106, r3d100012842 | http://neurovault.org/api https://doi.org/10.17616/R31NJMEI |
SCR_003806 | NeuroVault - A public repository of unthresholded brain activation maps | 2026-02-16 09:46:15 | 342 | ||||||
|
MRC Cognition and Brain Sciences Unit Resource Report Resource Website 10+ mentions |
MRC Cognition and Brain Sciences Unit (RRID:SCR_003818) | CBU | data or information resource, department portal, organization portal, portal | Unit studying human cognition and the brain with about 90 researchers and postgraduate students investigating topics such as attention, emotion, language and memory. They are developing new treatments for depression, improving hearing through cochlear implants, and helping children to overcome memory problems. With a large collection of scientists engaged in both basic and translational research on the mind and brain, the Unit provides an exceptional training and academic environment that benefits postgraduate students and researchers at all levels. A significant part of their research makes use of brain imaging and they have excellent on-site facilities for magnetic resonance imaging (MRI) magnetoencephalography (MEG) and electroencephalography (EEG). They also have clinical facilities at Addenbrooke's Hospital. The Unit has close links both with the hospital and with Cambridge University. | cognition, attention, language, memory, emotion, behavior, neuroimaging, computer modelling, brain, depressive disorder, hearing, cochlear implant, child, clinical, mri, magnetoencephalography, eeg, ear, cochlea |
has parent organization: University of Cambridge; Cambridge; United Kingdom is parent organization of: CBU Imaging Wiki is parent organization of: Kymata Atlas |
MRC | nlx_158118, grid.415036.5, Wikidata: Q5141152, ISNI: 0000 0001 2177 2032 | https://ror.org/055bpw879 | SCR_003818 | Cognition and Brain Sciences Unit | 2026-02-16 09:46:15 | 31 | ||||||
|
Synapse Web Resource Report Resource Website 50+ mentions |
Synapse Web (RRID:SCR_003577) | narrative resource, training material, atlas, image collection, data or information resource | A portal into the 3D ultrastructure of the brain providing: Anatomy of astrocytes, axons, dendrites, hippocampus, organelles, synapses; procedures of 3D reconstruction and tissue preparation; as well as an atlas of ultrastructural neurocytology (by Josef Spacek), online aligned images, and reconstructed dendrites. Synapse Web hosts an ultrastructural atlas containing more than 500 electron micrographs (added to regularly) that identify unique ultrastructural and cellular components throughout the brain. Additionally, Synapse Web has raw images, reconstructions, and quantitative data along with tutorial instructions and numerous tools for investigating the functional structure of objects that have been serial thin sectioned for electron microscopy. | electron microscopy, 3d reconstruction, neuroanatomy, astrocyte, axon, brain, cellular, dendrite, hippocampus, micrograph, microscopy, neurocytology, organelle, structure, synapse, tissue, ultrastructural, light microscopy, neuron, rat, experimental protocol, synapse structure |
is used by: NIF Data Federation has parent organization: University of Texas at Austin; Texas; USA |
The Human Brain Project ; NIDA R01 MH/DA 57351; NIMH R01 MH/DA 57351; NIBIB EB002170 |
Copyrighted, Acknowledgement required | nif-0000-00026 | SCR_003577 | SynapseWeb | 2026-02-16 09:46:04 | 69 | |||||||
|
NICHD Brain and Tissue Bank for Developmental Disorders Resource Report Resource Website 10+ mentions |
NICHD Brain and Tissue Bank for Developmental Disorders (RRID:SCR_003601) | NICHD BTB | brain bank, tissue bank, material resource, biomaterial supply resource | The objective of this human tissue repository is to systematically collect, store, and distribute brain and other tissues for research dedicated to the improved understanding, care, and treatment of individuals with developmental disorders. Brain sections are primarily frozen in isopentane / dry ice. Tissues are stored in 10% formalin and frozen at -85 degrees C. Of special interest are individuals with Down syndrome and other chromosomal defects, mitochondrial encephalopathies, phenylketonuria and other aminoacidopathies, maternal PKU, Rett syndrome, leukodystrophies, lysosomal disorders, dyslexia, autism, and other neurodevelopmental disorders. The brain and tissue banks have extensive experience in arranging for the rapid retrieval of tissue upon the death of individuals who die while at home, in hospitals or hospice care. As a special service, the brain and tissue banks are able to assist researchers who are working with patients who intend to donate tissues at the time of their death. Immediately after retrieval of the tissue, the brain and tissue banks will forward needed tissue to the referring investigators and ensure proper storage and cataloging of any additional tissues as part of the brain and tissue banks. The recipient of tissue and the brain and tissue banks are required to sign a Tissue Transfer Agreement before any tissues are transferred. | downloadable catalog, tissue, brain, body fluid, cardiovascular system, endocrine system, genital system, gastrointestinal system, hematopoietic system, integumentary, musculo-skeletal, respiratory system, spinal cord, nerve, urinary system, other, rna, frozen, fixed, developmental disorder, down syndrome, chromosomal defect, mitochondrial encephalopathy, phenylketonuria, maternal pku, rett syndrome, dyslexia, autism, neurodevelopmental disorder, aminoacidopathy, pervasive development disorder, leukodystrophy, lysosomal disorder, s syndrome |
is listed by: One Mind Biospecimen Bank Listing is listed by: Multiple Sclerosis Discovery Forum is related to: One Mind Biospecimen Bank Listing is related to: Multiple Sclerosis Discovery Forum has parent organization: University of Maryland School of Medicine; Maryland; USA |
Developmental disorder, Down syndrome, Chromosomal defect, Mitochondrial encephalopathy, Phenylketonuria, Maternal PKU, Rett Syndrome, Dyslexia, Autism, Neurodevelopmental disorder, Aminoacidopathy, Pervasive Development Disorder, Leukodystrophy, Lysosomal disorder, S syndrome | NIH Blueprint for Neuroscience Research contract HHSN275200900011C; NICHD NO1-HD-9-0011 |
Public: Tissues are made available to academic researchers and commercial enterprises for basic research. | nif-0000-00217 | SCR_003601 | Eunice Kennedy Shriver NICHD BTB, NICHD Brain and Tissue Bank, NICHD Brain Tissue Bank for Developmental Disorders, NICHD BTB for Developmental Disorders | 2026-02-16 09:46:04 | 38 | |||||
|
RFMRI.ORG Resource Report Resource Website 50+ mentions |
RFMRI.ORG (RRID:SCR_004042) | R-fMRI Network | forum, discussion, narrative resource, community building portal, portal, data or information resource | A network for supporting resting-state fMRI (R-fMRI) related studies. It connects R-fMRI researchers (as nodes) by their sharings (as edges). Through the network, ideas, comments, resources, tools, experiences, and data can be shared. Researchers (nodes) with basic neuroscience, methodological, or clinical backgrounds can connect with each other in the network. It also contains a preprint server that allows neuroscientists to share their preprints, comment on each others research and get back valuable information about their experiments from their colleagues. This is based on the arXiv model. Ultimately, the network aims to enhance collaborations among researchers, especially to translate knowledge of basic neuroscience and methodology to clinical applications (bench to bedside). | resting-state fmri, fmri, training material, brain |
is parent organization of: DPARSF is parent organization of: DPABI |
nlx_158470 | SCR_004042 | The R-fMRI Network - RFMRI.ORG, The R-fMRI Network a network for supporting resting-state fMRI related studies, R-fMRI Network, The R-fMRI Network - a network for supporting resting-state fMRI related studies, R-fMRI Network (RFMRI.ORG), The R-fMRI Network (RFMRI.ORG): A network for supporting resting-state fMRI related studies! | 2026-02-16 09:46:16 | 71 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
Email: info_at_ dknet.org
