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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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OpenPose Resource Report Resource Website 1+ mentions |
OpenPose (RRID:SCR_022362) | software application, data processing software, data analysis software, software resource | Software tool as multi subject keypoint detection library for real time pose estimation.Used to track behavior of monkeys in natural environments, without disrupting their typical pattern of behavior. Deep learning software system for body, face, hands, and foot estimation in monkeys. | OpenBehavior, tracking limb orientation, behavior measurement, freely moving, realtime recording and analysis, video analysis | is listed by: OpenBehavior | DOI:10.1101/2021.01.28.428726 | Free, Available for download, Freely available | https://github.com/CMU-Perceptual-Computing-Lab/openpose | SCR_022362 | 2026-02-15 09:22:44 | 9 | ||||||||
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TRex Resource Report Resource Website |
TRex (RRID:SCR_022361) | software application, data processing software, data analysis software, software resource | Open source animal tracking software tool. Used to visually track movement of multiple animals at once. | OpenBehavior, animal tracking, visually track movement | is listed by: OpenBehavior | DOI:10.7554/eLife.64000 | https://github.com/mooch443/trex | SCR_022361 | 2026-02-15 09:22:49 | 0 | |||||||||
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DLStream Resource Report Resource Website 1+ mentions |
DLStream (RRID:SCR_022359) | software application, data processing software, data analysis software, software resource | Software tool enables closed loop behavioral experiments using deep learning based markerless, real time posture detection.Closed loop behavioral experiment toolkit using pose estimation of body parts. | OpenBehavior, video analysis, behavioral experiment, pose estimation, body parts | is listed by: OpenBehavior | Projekt DEAL | DOI:10.1038/s42003-021-01654-9 | Free, Available for download, Freely available | https://github.com/SchwarzNeuroconLab/DeepLabStream | SCR_022359 | DeepLabStream | 2026-02-15 09:22:52 | 1 | ||||||
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Pyneal Resource Report Resource Website |
Pyneal (RRID:SCR_022333) | software application, data processing software, data analysis software, software resource | Open source software package to support rt-fMRI via data in formats generated by Siemens, Philips, and GE. Used to support real time functional magnetic resonance imaging. | OpenBehavior, real time functional magnetic resonance imaging | is listed by: OpenBehavior | DOI:10.3389/fnins.2020.00900 | Free, Available for download, Freely available | https://github.com/jeffmacinnes/pyneal | SCR_022333 | 2026-02-15 09:22:49 | 0 | ||||||||
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Atlas Based Analysis Resource Report Resource Website |
Atlas Based Analysis (RRID:SCR_022339) | ABA | software application, data processing software, data analysis software, software resource | Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously. | OpenBehavior, brain atlas based analysis pipeline, brain atlas, c-Fos immunohistochemical data, c-Fos, brain regions, simultaneous analysis, immunohistochemical data | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2020.108982 | Free, Available for download, Freely available | https://github.com/kopeclab/Atlas-Based-Analysis | SCR_022339 | ABA project | 2026-02-15 09:22:51 | 0 | ||||||
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | software application, data processing software, data analysis software, software resource | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | 2026-02-15 09:22:43 | 0 | ||||||||
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Lightning Pose Resource Report Resource Website |
Lightning Pose (RRID:SCR_024480) | software toolkit, software resource | Software video centric package for direct video manipulation. Semi supervised animal pose estimation algorithm, Bayesian post processing approach and deep learning package. Improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. | OpenBehavior, animal pose estimation algorithm, Bayesian post processing approach, direct video manipulation, | is listed by: OpenBehavior | Gatsby Charitable Foundation ; NINDS K99NS128075; Irma T Hirschl Trust ; NINDS NS075023; NINDS U19NS123716; NSF ; Simons Foundation |
PMID:37162966 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lightningpose/ | SCR_024480 | 2026-02-15 09:23:30 | 0 | |||||||
|
MotionMapper Resource Report Resource Website 1+ mentions |
MotionMapper (RRID:SCR_021384) | software application, data processing software, data analysis software, software resource | Software tool to work on videos (not poses).Uses image analysis and multivariate statistical methods to find stereotyped behaviors in flies, mice, and other species. | Find stereotyped behaviors, organisms behaviors, Behavior Measurement, Video Analysis, Behavior Video Analysis, Behavioral Data Analysis, OpenBehavior |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project has parent organization: Princeton University; New Jersey; USA |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/sleap/ | SCR_021384 | 2026-02-15 09:22:28 | 2 | |||||||||
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MouseMove Resource Report Resource Website |
MouseMove (RRID:SCR_021618) | software application, data processing software, data analysis software, software resource | Open source program for semi automated analysis of movement and cognitive testing in rodents. Accurately quantifies numerous parameters of movement including travel distance, speed, turning, stationary fraction and laterality. Part of MouseMove system. | Semi automated analysis, movement analysis, movement parameters quantification, OpenBehavior |
is listed by: OpenBehavior is related to: MouseMove project |
DOI:10.1038/srep16171 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/mousemove/ | SCR_021618 | 2026-02-15 09:22:38 | 0 | ||||||||
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EthoWatcher Resource Report Resource Website 1+ mentions |
EthoWatcher (RRID:SCR_021504) | software application, data processing software, data analysis software, software resource | Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher project |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ethowatcher/ | SCR_021504 | ETHOWATCHER | 2026-02-15 09:22:36 | 2 | |||||||
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Mousecam Resource Report Resource Website |
Mousecam (RRID:SCR_021503) | software application, data processing software, data analysis software, software resource | Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity. | Lightweight head mounted camera system, head movement sensors, monitor eye position, monitor pupil dilation, monitor whisking, monitor pinna movements, monitor head motion, unrestrained mice, freely behaving mice, multichannel electrophysiology, OpenBehavior |
is listed by: OpenBehavior is related to: Mousecam project |
DOI:10.1016/j.neuron.2018.09.020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/mousecam/ | SCR_021503 | 2026-02-15 09:22:31 | 0 | ||||||||
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Spike Forest Resource Report Resource Website 1+ mentions |
Spike Forest (RRID:SCR_021532) | software application, data processing software, data analysis software, software resource | Open source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest project |
DOI:10.7554/elife.55167 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/spikeforest/ | SCR_021532 | SpikeForest, SpikeForest v2 | 2026-02-15 09:22:37 | 1 | |||||||
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FaceMap Resource Report Resource Website 10+ mentions |
FaceMap (RRID:SCR_021513) | software application, data processing software, data analysis software, software resource | Software toolbox for unsupervised video analysis of rodent behavior.Used for videographic processing of head fixed rodent behavior. | Unsupervised video analysis, rodent behavior, videographic processing, head fixed rodent behavior, head fixed rodent, OpenBehavior |
is listed by: OpenBehavior is related to: FaceMap project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/facemap/ | SCR_021513 | 2026-02-15 09:22:06 | 19 | |||||||||
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Optimouse Resource Report Resource Website 1+ mentions |
Optimouse (RRID:SCR_021527) | software application, data processing software, data analysis software, software resource | Software tool for analysis of mouse position data.Open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error. | Mouse position data analysis, mouse position, position data, nose position, OpenBehavior |
is listed by: OpenBehavior is related to: Optimouse project |
DOI:10.1186/s12915-017-0377-3 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optimouse/ | SCR_021527 | 2026-02-15 09:22:31 | 2 | ||||||||
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Feeding Experimentation Device project Resource Report Resource Website 1+ mentions |
Feeding Experimentation Device project (RRID:SCR_015942) | FED | data or information resource, topical portal, portal | Flexible open-source device for measuring feeding behavior. FED measures food intake in mice. It is battery powered and designed to be used in rodent colony caging.Home cage-compatible feeding system that measures food intake with high accuracy and temporal resolution. FED offers alternative to commercial feeders, with convenience of use in tradition colony rack caging. | Feeding, food intake, optogenetic, behavioral data analysis, data analysis software, behavior apparatus, behavior rig, reward delivery, behavior measurement, homecage, Instrument, OpenBehavior |
is listed by: OpenBehavior has parent organization: Washington University in St. Louis; Missouri; USA |
NIH | PMID:27060385 | Commercially available | https://github.com/KravitzLab/FED1 https://edspace.american.edu/openbehavior/project/feeding-experimentation-device/ https://hackaday.io/project/72964-feeding-experimentation-device-fed-20 |
SCR_015942 | , FED1, FED2, Feeding Experimentation Device system, Feeding Experimentation Device | 2026-02-15 09:21:27 | 1 | |||||
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STPoseNet Resource Report Resource Website |
STPoseNet (RRID:SCR_026834) | source code, software resource | Source code for pose recognition model for laboratory mice based on yolov8. Real-time spatiotemporal network model for robust mouse pose estimation. | OpenBehavior, spatiotemporal network model, mouse pose estimation, | is listed by: OpenBehavior | National Natural Science Foundation of China | PMID:38711440 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/stposenet/ | SCR_026834 | 2026-02-15 09:24:03 | 0 | |||||||
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Eco-HAB Resource Report Resource Website |
Eco-HAB (RRID:SCR_021588) | instrument resource, data or information resource, project portal, portal | Portal provides open source, RFID-based system for automated measurement and analysis of social preference and in-cohort sociability in mice. System was developed by Nencki Institute of Experimental Biology scientists. | Instrument, murine social behavior, automated measurement, mice social preference, mice cohort sociability, social preference analysis, OpenBehavior |
is listed by: OpenBehavior has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland |
DOI:10.7554/elife.19532 | Free, Freely available | SCR_021588 | 2026-02-16 09:50:06 | 0 | |||||||||
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Oculomatic Eye Tracking project Resource Report Resource Website |
Oculomatic Eye Tracking project (RRID:SCR_021465) | instrument resource, data or information resource, project portal, portal | Project related to investigate mechanisms of oculomotor behavior.Included system is provided by New York University scientists to track eye movement.System includes camera module, lens, IR-Light source, mounting solution, data acquisition device, and general purpose PC. System consists of open source software and modular hardware solution to eye tracking for use in humans and non-human primates. | High speed eye tracking, Point Gray USB3.0 camera, Oculomatic Eye Tracking system, track eye movements, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Oculomatic has parent organization: New York University; New York; USA |
DOI:10.1016/j.jneumeth.2016.06.016 | Free, Freely available | SCR_021465 | Oculomatic Eye Tracking | 2026-02-16 09:50:03 | 0 | ||||||||
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M-Track Resource Report Resource Website |
M-Track (RRID:SCR_021508) | software application, data processing software, software toolkit, image analysis software, software resource | Software toolbox for automated detection of forepaw trajectories in mice.Open source code to simultaneously track movement of individual paws during spontaneous grooming episodes and walking in multiple freely behaving mice/rats. | Automated detection, forepaw trajectories, labelled forepaw, freely behaving mice, freely behaving rats, simultaneous trackcking individual paws, movement, spontaneous grooming episodes, OpenBehavior |
is listed by: OpenBehavior is related to: M-Track project |
DOI:10.1371/journal.pcbi.1005115 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/m-track/ | SCR_021508 | 2026-02-16 09:50:04 | 0 | ||||||||
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Moving Wall Box Resource Report Resource Website |
Moving Wall Box (RRID:SCR_021559) | instrument resource, data or information resource, project portal, portal | Portal provides Moving Wall Box system used to testing strategy task where mouse is repeatedly forced to jump over small ice by slowly moving walls whereby presence of animal is automatically sensed via balances and analyzed by microcontroller board which in turn controls movements of walls. Device provided by Max Planck Institute of Psychiatry scientist. Used for repeated assessment of fear coping strategies. | Instrument, behavioral inhibition, emotional challenging situation, OpenBehavior |
is listed by: OpenBehavior has parent organization: Max-Planck-Gesellschaft |
DOI:10.3389/fnbeh.2017.00201 | Free, Freely available | SCR_021559 | 2026-02-16 09:50:05 | 0 |
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