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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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LED Matrix Stimuli Resource Report Resource Website |
LED Matrix Stimuli (RRID:SCR_022345) | instrument resource, data or information resource, project portal, portal | Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project. | OpenBehavior, Instrument, device, behavior apparatus, behavioral task, perceptual decision making in rats |
is listed by: OpenBehavior has parent organization: American University; Washington D.C.; USA |
DOI:10.1523/ENEURO.0563-20.2021 | Free, Freely available | https://github.com/LaubachLab/LED-matrices | SCR_022345 | 2026-02-16 09:50:20 | 0 | ||||||||
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Closed Loop Automated Reaching Apparatus Resource Report Resource Website 1+ mentions |
Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) | CLARA | instrument resource, data or information resource, project portal, portal | Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency. | OpenBehavior, Instrument, interrogating complex motor behaviors apparatus, mouse behavior apparatus, markerless kinematic tracking, kinematic data, animal behavior, neural stimulation |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: University of Colorado School of Medicine; Colorado; USA |
DOI:10.1088/1741-2552/ac1ed1 | Free, Freely available | https://github.com/wryanw/CLARA_DLC | SCR_022365 | Closed Loop Automated Reaching Apparatus Project | 2026-02-16 09:50:20 | 1 | ||||||
|
TweetyNet Resource Report Resource Website |
TweetyNet (RRID:SCR_022360) | software application, data processing software, image analysis software, software resource, segmentation software | Software tool as single neural network model that learns how to segment spectrograms of birdsong into annotated syllables. | OpenBehavior, automated annotation, bengalese finches, canaries, neural network, song syntax, sound event detection, segment spectrograms, birdsong, annotated syllables | is listed by: OpenBehavior | DOI:10.7554/eLife.63853 | Free, Available for download, Freely available | https://github.com/yardencsGitHub/tweetynet/tree/0.7.0 | SCR_022360 | TweetyNet project | 2026-02-16 09:50:15 | 0 | |||||||
|
CellExplorer Resource Report Resource Website 10+ mentions |
CellExplorer (RRID:SCR_022358) | software application, data processing software, data analysis software, 1d time-series analysis software, software resource, time-series analysis software | Open source framework for single cell characterization and visualization.Graphical user interface, standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes. | OpenBehavior, single cell characterization and visualization, classifying single cells, extracellular electrodes | is listed by: OpenBehavior | DOI:10.1016/j.neuron.2021.09.002 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/cellexplorer/ https://github.com/petersenpeter/CellExplorer |
SCR_022358 | 2026-02-16 09:50:14 | 16 | ||||||||
|
Pycro Manager Resource Report Resource Website 1+ mentions |
Pycro Manager (RRID:SCR_022356) | data acquisition software, software application, data processing software, software resource | Open source software for customized and reproducible microscope control. Software Python package that enables control of micro-manager as well as development of customized experiments integrated with real-time image processing. | OpenBehavior, microscope control, image processing, micro manager | is listed by: OpenBehavior | DOI:10.1038/s41592-021-01087-6 | Free, Available for download, Freely available | https://github.com/micro-manager/pycro-manager | SCR_022356 | 2026-02-16 09:50:18 | 2 | ||||||||
|
Cellpose Resource Report Resource Website 1+ mentions |
Cellpose (RRID:SCR_022332) | software application, data processing software, image analysis software, software resource, segmentation software | Software tool as generalist algorithm for cell and nucleus segmentation. | OpenBehavior, Data Analysis, cell and nucleus segmentation | is listed by: OpenBehavior | DOI:10.1038/s41592-020-01018-x | https://github.com/mouseland/cellpose | SCR_022332 | 2026-02-16 09:50:17 | 7 | |||||||||
|
COMPASS Resource Report Resource Website 100+ mentions |
COMPASS (RRID:SCR_022329) | instrument resource, data or information resource, project portal, portal | Non invasive, infrared activity and sleep measurement system that uses passive infrared sensors and Arduino microprocessor. Publication provides protocol for assembling COMPASS as well as provides support protocols and python scripts for data analysis, best practices for optimum results, troubleshooting, and alternative protocols for different use scenarios. | OpenBehavior, Instrument, behavior apparatus, behavior measurement, sleep tracking, infrared sensors, Arduino microprocessor | is listed by: OpenBehavior | DOI:10.1002/cpmo.81 | https://github.com/MRC-Harwell/sleep-tracking | SCR_022329 | Continuous Open Mouse Phenotyping of Activity and Sleep Status | 2026-02-16 09:50:14 | 264 | ||||||||
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Brainrender Resource Report Resource Website 1+ mentions |
Brainrender (RRID:SCR_022328) | software application, data processing software, software toolkit, data visualization software, software resource | Software Python package for visualizing and interacting with datasets registered to brain atlases. Used for visualization of neuroanatomical and morphological data. | OpenBehavior, neuroanatomical and morphological data visualization |
is listed by: OpenBehavior is related to: Allen Institute for Brain Science |
DOI:10.7554/eLife.65751 | Free, Available for download, Freely available | https://github.com/brainglobe/brainrender | SCR_022328 | 2026-02-16 09:50:20 | 6 | ||||||||
|
TetrODrive Resource Report Resource Website |
TetrODrive (RRID:SCR_022326) | instrument resource, data or information resource, project portal, portal | 3D printed microdrive for electrophysiology and optophysiology. Consists of main body and head. Used for in vivo tetrode recording, optical imaging, and optogenetic manipulation in freely moving mice.Design files and build instructions for this device can be found on TetrODrive GitHub.Microdrive can be assembled in 15 min and price for all materials, including 3D printer, is lower than single commercial microdrive. | OpenBehavior, Instrument, microdrive, behavior measurement, freely moving, neural recording, electrical recording, optical imaging, neural modulation, optogenetics | is listed by: OpenBehavior | DOI:10.1088/1741-2552/abf608 | Free, Freely available | https://github.com/MarcelMB/TetrODrive | SCR_022326 | 2026-02-16 09:50:15 | 0 | ||||||||
|
Florida research open source synchronization tool Resource Report Resource Website |
Florida research open source synchronization tool (RRID:SCR_022344) | FROST | instrument resource, data or information resource, project portal, portal | Open source system built around Arduino based microcontroller for analog and digital input and synchronization combined with custom printed circuit board. Hardware and Arduino-based firmware used to synchronize experimental and electrophysiological data. | OpenBehavior, Instrument, device, synchronization tool, electrophysiology experiments, neural signal analysis, neural recording, electrical recording, synchronizing experimental and electrophysiological data. |
is listed by: OpenBehavior has parent organization: University of Florida; Florida; USA |
DOI:10.1016/j.jneumeth.2020.108800 | Free, Freely available | https://github.com/Brain-Mapping-Lab/FROST | SCR_022344 | FROST project | 2026-02-16 09:50:18 | 0 | ||||||
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pyOS-5 project Resource Report Resource Website |
pyOS-5 project (RRID:SCR_022335) | instrument resource, data or information resource, project portal, portal | Open source operant box system optimized for use with tethered animals. System includes hardware and software. Control electronics are build on pyControl, controlling custom PCB integrating 5 infra-red break-beam sensors and 5 stimulus LEDs, single nose-poke for reward receptacle, stepper motor for control of custom peristaltic pump for reward delivery, audio board for tone generation through attached speaker, house light and fan, LED driver for optogenetic stimulation, and bidirectional communication with external devices via TTL pulses. | OpenBehavior, Instrument, operant box system, tethered animals, behavior apparatus, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 |
DOI:10.1038/s41598-021-01717-1 | Free, Freely available | SCR_022335 | Python based operant box system in 5-choice design, pyOS-5 | 2026-02-16 09:50:20 | 0 | ||||||||
|
pyPhotometry Resource Report Resource Website 1+ mentions |
pyPhotometry (RRID:SCR_022940) | instrument resource, data or information resource, project portal, portal | Open source Python based hardware and software for fiber photometry data acquisition. System includes compact, low cost, data acquisition board built around Micropython microcontroller, and cross platform graphical user interface for controlling acquisition and visualising signals. Can acquire two analog and two digital signals, and control two external LEDs via built in LED drivers. Time division multiplexed illumination allows independent readout of fluorescence evoked by different excitation wavelengths from single photoreceiver signal. | OpenBehavior, instrument, fiber photometry, Micropython microcontroller, analog control signals, data acquisition and analysis | is listed by: OpenBehavior | PMID:30837543 | Free, Available for download, Freely available | https://github.com/pyPhotometry | SCR_022940 | 2026-02-16 09:50:34 | 3 | ||||||||
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USVCAM Resource Report Resource Website |
USVCAM (RRID:SCR_022747) | instrument resource, data or information resource, project portal, portal | Open source acoustic camera system for measuring ultrasound communication in rodents. System includes small phased microphone array combined with camera and comprises USV segmentation algorithms with modification for overlapping vocalizations that results in high accuracy. Enables simpler and faster USV localization and assignment. | OpenBehavior, instrument, acoustic camera system, measuring ultrasound communication in rodents |
is listed by: OpenBehavior has parent organization: University of Toyama; Toyama; Japan |
PMID:35982786 | Free, Freely available | https://edspace.american.edu/openbehavior/?s=USVCAM | SCR_022747 | USVCAM project, ultrasonic vocalizations camera | 2026-02-16 09:50:30 | 0 | |||||||
|
Minian Resource Report Resource Website 1+ mentions |
Minian (RRID:SCR_022601) | software application, data processing software, software toolkit, data analysis software, software resource | Software miniscope analysis pipeline that requires low memory and computational demand so it can be run without specialized hardware. Offers interactive visualization that allows users to see how parameters in each step of pipeline affect output. | Miniscope, analysis pipeline, calcium imaging, mouse, Visualization, OpenBehavior |
is listed by: OpenBehavior has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NIMH DP2MH122399; NIMH R01MH120162; NIBIB R01EB028166; NSF 1926800; NSF 2046583; NINDS U01NS094286; NSF 1700408; NIA F32AG067640; NINDS R03 NS111493; NIDA R21 DA049568; NINDS R01 NS116357 |
PMID:35642786 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/minian/ | SCR_022601 | 2026-02-16 09:50:20 | 4 | |||||||
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ACTman Resource Report Resource Website |
ACTman (RRID:SCR_023119) | software resource, software toolkit, software library | Software R library to automate labor intensive actigraphy data preprocessing and analyses steps while improving transparency, reproducibility, and scalability over software suites traditionally used in actigraphy research practice. Provides streamlined preprocessing while validating circadian rhythm and sleep analysis. | OpenBehavior, actigraphy data preprocessing, actigraphy data analyses, actigraphy, validating circadian rhythm and sleep analysis, | is listed by: OpenBehavior | European Research Council | DOI:S1440-2440(19)30287-7/fulltext | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=ACTman | SCR_023119 | Actigraphy Manager | 2026-02-16 09:50:25 | 0 | ||||||
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Autonomous Training of a Forelimb Motor Task Resource Report Resource Website |
Autonomous Training of a Forelimb Motor Task (RRID:SCR_021603) | source code, software resource | Software Python tool running on Raspberry Pi computer. Used for trial timing and data logging. Part of Autonomous Training of Forelimb Motor Task system. | Custom Python tool, task difficulty, trial timing, data logging, OpenBehavior |
is listed by: OpenBehavior is related to: Autonomous Training of a Forelimb Motor Task project |
DOI:10.1152/jn.00115.2017 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/autonomous-training-forelimb-motor-task/ | SCR_021603 | 2026-02-15 09:22:38 | 0 | ||||||||
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Operant Box for Auditory Tasks Resource Report Resource Website |
Operant Box for Auditory Tasks (RRID:SCR_021604) | source code, software resource | Software tool as part of Operant Box for Auditory Tasks system. | Operant Box, Auditory Tasks, OpenBehavior |
is listed by: OpenBehavior is related to: Operant Box for Auditory Tasks project |
DOI:10.3758/s13428-017-0906-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/operant-box-auditory-tasks-obat/ | SCR_021604 | 2026-02-15 09:22:33 | 0 | ||||||||
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GoFish Ajuwon etal 2022 Resource Report Resource Website 1+ mentions |
GoFish Ajuwon etal 2022 (RRID:SCR_022511) | source code, software resource | Bonsai code for running GOFish platform for behavioural experiments in fish. | Bonsai code, running GOFish platform, behavioural experiments in fish, OpenBehavior | is listed by: OpenBehavior | DOI:10.1101/2022.04.04.486957 | Free, Available for download, Freely available | SCR_022511 | GoFish_Ajuwon_etal_2022 | 2026-02-15 09:22:55 | 2 | ||||||||
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Pipette Finding CNN Resource Report Resource Website |
Pipette Finding CNN (RRID:SCR_024992) | source code, software resource | Software application for convolutional neural network that assesses pipette positioning before patch clamp is begun to minimize patch clamping errors in electrophysiology experiments. Used for detecting pipette positioning and making patch clamping procedures. | OpenBehavior, convolutional neural network, pipette positioning assessement, minimize patch clamping errors, electrophysiology experiments, detecting pipette positioning, making patch clamping procedures, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pipette-finding-cnn/ | SCR_024992 | Pipette Finding Convolutional Neural Network | 2026-02-15 09:23:52 | 0 | ||||||||
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Custom-fitting-of-implants Resource Report Resource Website |
Custom-fitting-of-implants (RRID:SCR_025270) | source code, software resource | Tutorial to custom-design and -fit implants to continuous and discontinuous skull surfaces. Universal Guide for Skull Extraction and Custom-Fitting of Implants to Continuous and Discontinuous Skulls. | OpenBehavior, Cranial Implants, Skull Extraction, Custom-Fitting of Implants, Continuous and Discontinuous Skulls, | is listed by: OpenBehavior | PMID:35641225 | https://edspace.american.edu/openbehavior/project/cranial-implants/ | SCR_025270 | custom-fitting cranial implants | 2026-02-15 09:22:57 | 0 |
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