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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ColonyTrack Resource Report Resource Website |
ColonyTrack (RRID:SCR_023026) | software resource, software toolkit | Software R package to process raw data from ColonyRack system. In addition to generating pre processed data and quality control information, range of high level metrics are calculated together with convenient tools for analysis. | OpenBehavior, discrete longitudinal tracking data, process raw data from ColonyRack system, generating pre processed data, quality control information | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/rtrack-colonytrack/ | SCR_023026 | 2026-02-16 09:50:28 | 0 | |||||||||
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Open Face Homecage Running Wheel Resource Report Resource Website |
Open Face Homecage Running Wheel (RRID:SCR_023642) | software resource, instrument resource | Open source, printable, open faced running wheels for mice residing in home cage that is automated to collect locomotor information such as distance traveled, wheel direction, and velocity. Running wheel system available on GitHub contains code and information to create and run running wheels. System consists of 3D printed wheel, Raspberry Pi 0 W, and supporting components. | Running wheels for mice, OpenBehavior, instrument, running wheels, 3D printed wheel, | is listed by: OpenBehavior | PMID:36241420 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/running-wheel/ | SCR_023642 | 2026-02-16 09:50:32 | 0 | ||||||||
|
B-CALM Resource Report Resource Website 1+ mentions |
B-CALM (RRID:SCR_023884) | software resource, instrument resource | Open source system for behavioral control based on Arduino Mega microcontroller and MATLAB based graphical interface and analysis code. Behavior controller optimized and customized for associative learning and memory tasks. Provided software should be able to control many different types of hardware for different task configurations. | OpenBehavior, instrument, behavioral controller, associative learning and memory, | is listed by: OpenBehavior | NIMH R00MH118422; NIMH R01MH129582; NIAAA R01AA029661; Scott Alan Myers Endowed Professorship |
PMID:37464151 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/b-calm/ | SCR_023884 | 2026-02-16 09:50:46 | 1 | |||||||
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Falcon Resource Report Resource Website 1+ mentions |
Falcon (RRID:SCR_023199) | software resource, software toolkit | Open source software tool for closed loop neuroscientific experiments capable of sub-millisecond response latency over high-rate streaming data acquired from high-count multi-electrode arrays. Used for processing and controlling closed-loop neuroscience data. | OpenBehavior, processing and controlling closed-loop data, implementing closed loop neuroscience experiments, high rate streaming data, high count multi electrode arrays, neuroscience data | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa7526 | Free, Freely available | https://edspace.american.edu/openbehavior/project/falcon/ | SCR_023199 | 2026-02-16 09:50:36 | 6 | ||||||||
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RatInABox Resource Report Resource Website 1+ mentions |
RatInABox (RRID:SCR_023682) | software resource, software toolkit | Software Python toolkit for modelling locomotion and neuronal activity in continuous environments. Used to model realistic rodent locomotion and generate synthetic electrophysiological data from spatially modulated cell types. | OpenBehavior, modelling locomotion and neuronal activity, continuous environments, model realistic rodent locomotion, generate synthetic electrophysiological data, spatially modulated cell types, | is listed by: OpenBehavior | DOI:10.1101/2022.08.10.503541 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ratinabox/ | SCR_023682 | 2026-02-16 09:50:45 | 1 | ||||||||
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Raspberry Pi Grating Resource Report Resource Website |
Raspberry Pi Grating (RRID:SCR_023157) | RPG | software resource, software toolkit | Software Python package written for Raspberry Pi for displaying visual stimuli and to provide real time feedback on stimulus timing. High performance python library for displaying drifting gratings on Raspberry Pi 3. | OpenBehavior, Raspberry Pi 3, displaying drifting gratings on Raspberry Pi 3, displaying visual stimuli, stimulus timing feedback, video data storage, data rapid display | is listed by: OpenBehavior | PMID:34464650 | Free, Freely available, Available to download | https://edspace.american.edu/openbehavior/project/rpg/ | SCR_023157 | 2026-02-16 09:50:39 | 0 | |||||||
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OpBox Resource Report Resource Website 1+ mentions |
OpBox (RRID:SCR_023269) | software resource, software toolkit | Open source electrophysiology hardware and software package for simultaneous EEG and EMG acquisition from multiple subjects. | OpenBehavior, electrophysiology, simultaneous EEG and EMG acquisition, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0212-20.2020 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=OpBoxPhys | SCR_023269 | 2026-02-16 09:50:27 | 1 | ||||||||
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Dual port Lick Detector project Resource Report Resource Website |
Dual port Lick Detector project (RRID:SCR_021454) | instrument resource, data or information resource, project portal, portal | Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Dual Port Lick Detector |
DOI:10.1152/jn.00500.2018 | Free, Freely available | SCR_021454 | Dual port Lick Detector | 2026-02-16 09:50:03 | 0 | ||||||||
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Cerebro Wireless Optogenetic System project Resource Report Resource Website |
Cerebro Wireless Optogenetic System project (RRID:SCR_021474) | instrument resource, data or information resource, project portal, portal | Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands. | Wireless optogenetic stimulation, Janelia open source hardware, Janelia open source software, Cerebro battery powered wireless receiver, head implant, Xavier, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021474 | Cerebro Wireless Optogenetic System | 2026-02-16 09:50:04 | 0 | |||||||||
|
4 Port Nose Poke Resource Report Resource Website |
4 Port Nose Poke (RRID:SCR_021592) | instrument resource, data or information resource, project portal, portal | Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments. | Instrument, motor behavior, behavioral arena, nose poke system, Arduino microcontroller, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Basel; Basel; Switzerland |
DOI:10.1016/j.mex.2016.04.002 | Free, Freely available | SCR_021592 | 2026-02-16 09:50:06 | 0 | |||||||||
|
Open Source platform for Sensory Tasks project Resource Report Resource Website |
Open Source platform for Sensory Tasks project (RRID:SCR_021468) | instrument resource, data or information resource, project portal, portal | Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists. | Go or No Go sensory task, report animal decision, stimulus response, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.3389/fncel.2017.00156 | Free, Freely available | SCR_021468 | Open Source platform for Sensory Tasks | 2026-02-16 09:50:02 | 0 | ||||||||
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MRI Compatible Microdrive Resource Report Resource Website |
MRI Compatible Microdrive (RRID:SCR_022352) | instrument resource, data or information resource, project portal, portal | MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts. | OpenBehavior, Instrument, device, microdrive, neural signal analysis, neural recording, electrical recording, electrode precisely positioning, MRI compatible equipment | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0495-20.2021 | Free, Freely available | https://osf.io/tnpmk/ | SCR_022352 | 2026-02-16 09:50:15 | 0 | ||||||||
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Neonatal Stereotaxic Mouse Adaptor Resource Report Resource Website |
Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) | instrument resource, data or information resource, project portal, portal | 3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice. | OpenBehavior, Instrument, 3D printed device, stable and precise 3D printed device for stable and precise stereotaxic surgery in neonatal mice, stereotaxic surgery, neonatal mice | is listed by: OpenBehavior | DOI:10.2144/btn-2020-0050 | Free, Freely available | SCR_022349 | 2026-02-16 09:50:14 | 0 | |||||||||
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LED Matrix Stimuli Resource Report Resource Website |
LED Matrix Stimuli (RRID:SCR_022345) | instrument resource, data or information resource, project portal, portal | Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project. | OpenBehavior, Instrument, device, behavior apparatus, behavioral task, perceptual decision making in rats |
is listed by: OpenBehavior has parent organization: American University; Washington D.C.; USA |
DOI:10.1523/ENEURO.0563-20.2021 | Free, Freely available | https://github.com/LaubachLab/LED-matrices | SCR_022345 | 2026-02-16 09:50:20 | 0 | ||||||||
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Closed Loop Automated Reaching Apparatus Resource Report Resource Website 1+ mentions |
Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) | CLARA | instrument resource, data or information resource, project portal, portal | Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency. | OpenBehavior, Instrument, interrogating complex motor behaviors apparatus, mouse behavior apparatus, markerless kinematic tracking, kinematic data, animal behavior, neural stimulation |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: University of Colorado School of Medicine; Colorado; USA |
DOI:10.1088/1741-2552/ac1ed1 | Free, Freely available | https://github.com/wryanw/CLARA_DLC | SCR_022365 | Closed Loop Automated Reaching Apparatus Project | 2026-02-16 09:50:20 | 1 | ||||||
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TweetyNet Resource Report Resource Website |
TweetyNet (RRID:SCR_022360) | software application, data processing software, image analysis software, software resource, segmentation software | Software tool as single neural network model that learns how to segment spectrograms of birdsong into annotated syllables. | OpenBehavior, automated annotation, bengalese finches, canaries, neural network, song syntax, sound event detection, segment spectrograms, birdsong, annotated syllables | is listed by: OpenBehavior | DOI:10.7554/eLife.63853 | Free, Available for download, Freely available | https://github.com/yardencsGitHub/tweetynet/tree/0.7.0 | SCR_022360 | TweetyNet project | 2026-02-16 09:50:15 | 0 | |||||||
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CellExplorer Resource Report Resource Website 10+ mentions |
CellExplorer (RRID:SCR_022358) | software application, data processing software, data analysis software, 1d time-series analysis software, software resource, time-series analysis software | Open source framework for single cell characterization and visualization.Graphical user interface, standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes. | OpenBehavior, single cell characterization and visualization, classifying single cells, extracellular electrodes | is listed by: OpenBehavior | DOI:10.1016/j.neuron.2021.09.002 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/cellexplorer/ https://github.com/petersenpeter/CellExplorer |
SCR_022358 | 2026-02-16 09:50:14 | 16 | ||||||||
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Pycro Manager Resource Report Resource Website 1+ mentions |
Pycro Manager (RRID:SCR_022356) | data acquisition software, software application, data processing software, software resource | Open source software for customized and reproducible microscope control. Software Python package that enables control of micro-manager as well as development of customized experiments integrated with real-time image processing. | OpenBehavior, microscope control, image processing, micro manager | is listed by: OpenBehavior | DOI:10.1038/s41592-021-01087-6 | Free, Available for download, Freely available | https://github.com/micro-manager/pycro-manager | SCR_022356 | 2026-02-16 09:50:18 | 2 | ||||||||
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Cellpose Resource Report Resource Website 1+ mentions |
Cellpose (RRID:SCR_022332) | software application, data processing software, image analysis software, software resource, segmentation software | Software tool as generalist algorithm for cell and nucleus segmentation. | OpenBehavior, Data Analysis, cell and nucleus segmentation | is listed by: OpenBehavior | DOI:10.1038/s41592-020-01018-x | https://github.com/mouseland/cellpose | SCR_022332 | 2026-02-16 09:50:17 | 7 | |||||||||
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COMPASS Resource Report Resource Website 100+ mentions |
COMPASS (RRID:SCR_022329) | instrument resource, data or information resource, project portal, portal | Non invasive, infrared activity and sleep measurement system that uses passive infrared sensors and Arduino microprocessor. Publication provides protocol for assembling COMPASS as well as provides support protocols and python scripts for data analysis, best practices for optimum results, troubleshooting, and alternative protocols for different use scenarios. | OpenBehavior, Instrument, behavior apparatus, behavior measurement, sleep tracking, infrared sensors, Arduino microprocessor | is listed by: OpenBehavior | DOI:10.1002/cpmo.81 | https://github.com/MRC-Harwell/sleep-tracking | SCR_022329 | Continuous Open Mouse Phenotyping of Activity and Sleep Status | 2026-02-16 09:50:14 | 264 |
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