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https://github.com/cpapasavvas/LinCoM

Software MATLAB package for linearization of place fields in complex mazes.Graph theoretic approach for production of linear place fields in complex mazes. Used for producing linear place fields for hippocampal cells during behavior in complex mazes.Specifically designed to deal with mazes with one or more decision points (e.g., T-maze, W-maze, double T-maze, radial maze, plus maze, etc).

Proper citation: LinCoM (RRID:SCR_021519) Copy   

•   Source: SciCrunch Registry

https://github.com/denisecailab/ezTrack

Open source video analysis pipeline for investigation of animal behavior. Platform independent set of behavior analysis pipelines using interactive Python ( (iPython/Jupyter Notebook) that researchers with no prior programming experience can use.

Proper citation: ezTrack (RRID:SCR_021496) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/syringepumpcontroller/

Project related to dispensing precise volumes of fluid over precise timescales.System components include syringe holder and control board with syringe pump controller and programming library.Syringe pump controller was developed by American University scientists.

Proper citation: Precision Syringe Pump Controller project (RRID:SCR_021493) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pivr/

Project related to study of orientation behavior and neural circuit functions, through creation and analysis of small, freely moving animals in virtual realities. Provides virtual reality tool system for behavioral and neural circuit studies of small animals.Closed loop platform to study unrestrained sensorimotor behavior.

Proper citation: Pi Virtual Reality System project (RRID:SCR_021490) Copy   

•   Source: SciCrunch Registry

https://github.com/neurospin/pypreclin

Software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline.

Proper citation: Pypreclin (RRID:SCR_021526) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-tes/

Project is related to transcranial Electrical Stimulation.Included system contains aluminum box stimulator with banana connectors for both anode and cathode on front panel,power supply on rear, power switch and serial port, LCD screen and three buttons on top panel that are used to input settings for stimulator. Device for delivering non-invasive neuromodulation techniques such as transcranial direct current stimulation. If device is used for certain types of tDCS (otDCS and tPCs) or external triggering, computer control must be used. Microcontroller is used to regulate operating speed and pulse width modulation switching frequency administrated by device.

Proper citation: Open-tES project (RRID:SCR_021487) Copy   

•   Source: SciCrunch Registry

https://github.com/MatthewBCooke/Pathfinder/

Open source software for analyzing spatial navigation search strategies.

Proper citation: Pathfinder (RRID:SCR_021520) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/openmonkeystudio/

Project for tracking interactions among freely moving monkeys.System includes integrated hardware and software for pose tracking in freely moving rhesus macaques.

Proper citation: OpenMonkeyStudio project (RRID:SCR_021409) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/rat/

Project related to rodent tracking and task control.Provides closed loop system for machine vision rodent tracking and task control created by scientist from Washington University. System to track and report mouse activity while they are contained in simple arena. System uses OpenMV M7 microcontroller to acquire images of arena and process them in real-time to report mouse centroid data to text file. Wireless position tracker for automatically tracking mice in high contrast arenas.

Proper citation: Rodent Arena Tracker project (RRID:SCR_021408) Copy   

•   Source: SciCrunch Registry

https://wavesurfer.janelia.org/

Open source software application for neurophysiology data acquisition and analysis. Program is based in MatLab, and evolved from earlier open source software package called Ephus.

Proper citation: Wave Surfer (RRID:SCR_021529) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/nerd/

Portal provides open source neural recording device for wireless transmission of local field potential data in freely behaving animals. Used for electrophysiological recording of local field potentials in freely behaving animals.

Proper citation: NeRD (RRID:SCR_021582) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ninscope/

Portal provides miniscope for fluorescence imaging and optogenetic stimulation. Used for monitoring of neural signals during unrestrained behavior.

Proper citation: NINscope (RRID:SCR_021577) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/3d-printed-headcap-microdrive/

Portal provides novel head cap and microdrive design for chronic multi electrode recordings in rats through use of 3D printing technology. Head cap and microdrive designs can be fabricated at little cost using consumer grade 3D printers.

Proper citation: 3D Printed Headcap and Microdrive (RRID:SCR_021595) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/multicam-headmount/

Portal provides system of two multi camera head mounts for mice in order to record physiological changes in certain behaviors. System used for video tracking of rodents behavior.

Proper citation: A Head Mounted Multi Camera System for Freely Moving Mice project (RRID:SCR_021591) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/microwave-based-homecage-motion-detector/

Portal provides radar based motion detector for home cage activity monitoring in mice. System is used for motion detection without visual contact to animal and can be used with various cage types. Features custom printed circuit board and motion detector shield for Arduino, which saves raw activity and timestamped data in CSV files onto SD card.Developed by Max Planck Institute of Psychiatry scientists. Authors also provide Python script for data analysis and generation of actograms.

Proper citation: Microwave based Homecage Motion Detector project (RRID:SCR_021590) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/opensource-lickometer-microstructure-analysis-program/

Portal provides open source lickometer that utilizes readily available or customizable components such as PC sound card and 3D printed drinking bottle holder. System consists of apparatus itself and open source software to collect and analyze data. Recording of raw data is handled by Audacity, open source audio program.

Proper citation: An Opensource lickometer and microstructure analysis program (RRID:SCR_021589) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pried/

Portal provides open Source 3-D Printed Modular micro drive system for acute primate neurophysiology.

Proper citation: PRiED (RRID:SCR_021586) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/

Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages.

Proper citation: Automated Home-Cage Functional Imaging project (RRID:SCR_021567) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/

Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.

Proper citation: Dual port Lick Detector project (RRID:SCR_021454) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/cerebro/

Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands.

Proper citation: Cerebro Wireless Optogenetic System project (RRID:SCR_021474) Copy   

•   Source: SciCrunch Registry