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https://sourceforge.net/projects/toxtrac/

Software tool for tracking organisms.

Proper citation: ToxTrac (RRID:SCR_021502) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/arduipod-box/

Project related to presenting visual and auditory stimuli, recording behavior in form of nose pokes or screen touches, and delivering liquid rewards. ProvidesOperant chamber built with iPod Touch and Arduino microcontroller as main components.

Proper citation: ArduiPod Box project (RRID:SCR_021466) Copy   

•   Source: SciCrunch Registry

https://github.com/ThreeD-Tracker-FAB

Open source software tool for 3D-video based markerless computerized behavioral analysis for laboratory animals.Used to reconstruct full 3D images of animals and fit skeletal models to 3D image to estimate 3D pose of animals.Open-source 3D video based behavioral analysis system for neuroscience.

Proper citation: 3DTracker (RRID:SCR_021506) Copy   

•   Source: SciCrunch Registry

https://github.com/gilestrolab/ethoscope

Software R package for data analysis.Enables high throughput analysis of behavior in Drosophila and other animals.

Proper citation: EthoScopes (RRID:SCR_021507) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-source-joystick/

Project related to studying motor behavior and decision making in mice. Open source behavior training platform for studying motor control, decision making, and reaching reaction time. Enables behavioral work to study unexplored features of action selection, motivation, and value based decisions.

Proper citation: Joystick project (RRID:SCR_021442) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/catalepsybar/

Project related to measuring of muscular rigidity that can result from several factors including Parkinsons disease, or pharmacological exposure to antipsychotics or cannabis. Provides automated apparatus for measuring catalepsy that increases measurement accuracy and reduces observer bias.Catalepsy bar test automatically measures and records time it takes for rat to remove its forelimbs from bar. 3D printed test apparatus used to make catalepsy measurements in rats more standardized and accurate.

Proper citation: Catalepsy Bar project (RRID:SCR_021439) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/maple/

Portal related to measurement of fly social networks and behavior. Provides Drosophila handing robot that boasts modular design, allowing platform to both automate diverse phenotyping assays and aid with lab chores (e.g., collecting virgin female flies). MAPLE permits small part manipulator, USB digital camera, and fly manipulator to work simultaneously over platform of flies.

Proper citation: Modular Automated Platform for Large Scale Experiments project (RRID:SCR_021557) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-skinner-box/

Project related to training animal behavior. Provides system which includes full behavioral apparatus and software platform. System includes software tool for data logging and analysis.

Proper citation: Skinner Box project (RRID:SCR_021437) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/arcontrol/

Portal related to delivering stimuli and monitoring responses. Provided behavioral platform was developed by scientists from Huazhong University of Science and Technology, Wuhan, China. System uses Arduino UNO board and simple drive circuit along with stand-along GUI application. Experimental data is automatically recorded with built-in data acquisition function and entire behavioral schedule is stored within Arduino chip.

Proper citation: ArControl project (RRID:SCR_021556) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/snackclock/

Project related to feeding behavior.Provides device for dispensing pre-measured quantities of food at regular intervals throughout day. Device uses 24 hour clock movement to rotate dispenser wheel one revolution per day.

Proper citation: SnackClock (RRID:SCR_021554) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/optopad-and-flypad/

Project related to analysis of behavior and of neural activity. Provides FPGA code for running main board of flyPAD.

Proper citation: flyPAD project (RRID:SCR_021449) Copy   

•   Source: SciCrunch Registry

https://github.com/aarac/DeepBehavior

Software toolbox that automates taking high speed quality video to track behavior to analyze and track behavior in rodents and humans.

Proper citation: DeepBehavior (RRID:SCR_021414) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/low-cost-eye-tracking/

Project related to eye tracking system for human research.System includes open source software for accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras.

Proper citation: Low Cost Open Source Eye Tracking project (RRID:SCR_021415) Copy   

•   Source: SciCrunch Registry

https://github.com/mtlippert/CAVE

Open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data.

Proper citation: Calcium ActiVity Explorer (RRID:SCR_021498) Copy   

•   Source: SciCrunch Registry

https://github.com/video-annotator/pythonvideoannotator-module-idtrackerai

Software tool as Python Video Annotator software.Agorithm and tracking software that features two deep networks.Tracks animal identification and tracks when animals touch or cross paths in front of one another.

Proper citation: idtracker.ai (RRID:SCR_021499) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/locomouse/

Project related to study movement coordination in free walking mice. Provides noninvasive system consisting of cameras and machine learning algorithms that allow for three dimensional detection and tracking of mouse paws, tail, and nose.

Proper citation: Locomouse project (RRID:SCR_021390) Copy   

•   Source: SciCrunch Registry

https://github.com/careylab/LocoMouse

Software kinematics analysis tool used to study movement coordination and analyzing limb, head, and tail kinematics of freely walking mice.

Proper citation: LocoMouse (RRID:SCR_021397) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deepposekit/

Project related to pose estimation and tracking.Includes software toolkit for 2D pose estimation of user defined keypoints using deep learning.Method for pose estimation developed by behavioral scientists at the Max Planck Institute of Animal Behavior.

Proper citation: DeepPoseKit project (RRID:SCR_021395) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/

Project related to cognitive testing method for rodents.Provides touchscreen operant platform for testing learning and memory in rats and mice.Includes device chambers that can be used to measure rodent behavior.Not open source device.

Proper citation: Touchscreen Cognition (RRID:SCR_021550) Copy   

•   Source: SciCrunch Registry

https://github.com/ncguilbeault/BonZeb

Open source, modular software tools for high resolution zebrafish tracking and analysis.Software suite of Bonsai modules for specifically tracking and analyzing zebrafish movements and integrating these data with closed loop experiments.Can be used in open loop fashion for collecting, analyzing, and integrating data from multiple sources in real time, or from offline sources for batch processing of pre-recorded data.

Proper citation: BonZeb (RRID:SCR_021392) Copy   

•   Source: SciCrunch Registry