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https://edspace.american.edu/openbehavior/project/eztrack/

Project related to behavior analysis.Mt.Sinai scientist developed open source video analysis pipeline for investigation of animal behavior.Used to track location, motion, and freezing of animal.

Proper citation: ezTrack project (RRID:SCR_021418) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/freemovr/

Portal related to virtual reality for freely moving animals.Provides virtual reality system set up for unrestrained animals.System developed by University of Frieburg scientists. This Virtual Reality system can be used with number of different species including mice, zebrafish, and Drosophila.

Proper citation: FreemoVR project (RRID:SCR_021551) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deeplabcut/

Project for markerless pose estimation of user defined body parts with deep learning.

Proper citation: DeepLabCut Project (RRID:SCR_021398) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pyper/

Project related to motion tracking of specimen in open field. Provides software tool for motion tracking.Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version of Pyper allows to customise image processing to track different kind of objects.

Proper citation: Pyper project (RRID:SCR_021431) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/facemap/

Project related to videographic processing of head fixed rodent behaviors. Provides software toolbox for unsupervised video analysis of rodent behavior.

Proper citation: FaceMap project (RRID:SCR_021428) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/zebratrack/

Project related to distraction free behavioral acquisition. Provides imaging setup for distraction free behavioral acquisition with automated tracking using open source ImageJ software and workflow for extraction of behavioral endpoints of zebrafish. Used for online tracking of larval zebrafish at high framerates.Provides user interface to run experiments as well as flexible design to allow definition of arbitrary open- and closed- loop experiments.

Proper citation: ZebraTrack project (RRID:SCR_021429) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/neurotic/

Project about synchronizing video and neural signals. Provides software Python toolbox for interactive characterization in neuroscience.Software tool used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats.

Proper citation: neurotic project (RRID:SCR_021403) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deepfly3d/

Project related to deep learning based pose estimator for studying how neural circuits control limbed behaviors in tethered Drosophila. Includes Deep Fly image annotation tool for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose.

Proper citation: DeepFly3D project (RRID:SCR_021400) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/rodentjoystick/

Project features single board real time input/output system including touch sensing joysticks to quantify mouse forelimb trajectories with micron millisecond spatiotemporal resolution, which resolves mouse forelimb kinematics and further allows extraction of primitives. Joystick increases spatial precision, and reduces displacement force. Joystick is then integrated into automated home cage system to train mice in center out reach task.

Proper citation: RodentJoystick (RRID:SCR_023482) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/nerd/

Portal provides open source neural recording device for wireless transmission of local field potential data in freely behaving animals. Used for electrophysiological recording of local field potentials in freely behaving animals.

Proper citation: NeRD (RRID:SCR_021582) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ninscope/

Portal provides miniscope for fluorescence imaging and optogenetic stimulation. Used for monitoring of neural signals during unrestrained behavior.

Proper citation: NINscope (RRID:SCR_021577) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/3d-printed-headcap-microdrive/

Portal provides novel head cap and microdrive design for chronic multi electrode recordings in rats through use of 3D printing technology. Head cap and microdrive designs can be fabricated at little cost using consumer grade 3D printers.

Proper citation: 3D Printed Headcap and Microdrive (RRID:SCR_021595) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/multicam-headmount/

Portal provides system of two multi camera head mounts for mice in order to record physiological changes in certain behaviors. System used for video tracking of rodents behavior.

Proper citation: A Head Mounted Multi Camera System for Freely Moving Mice project (RRID:SCR_021591) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/microwave-based-homecage-motion-detector/

Portal provides radar based motion detector for home cage activity monitoring in mice. System is used for motion detection without visual contact to animal and can be used with various cage types. Features custom printed circuit board and motion detector shield for Arduino, which saves raw activity and timestamped data in CSV files onto SD card.Developed by Max Planck Institute of Psychiatry scientists. Authors also provide Python script for data analysis and generation of actograms.

Proper citation: Microwave based Homecage Motion Detector project (RRID:SCR_021590) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/opensource-lickometer-microstructure-analysis-program/

Portal provides open source lickometer that utilizes readily available or customizable components such as PC sound card and 3D printed drinking bottle holder. System consists of apparatus itself and open source software to collect and analyze data. Recording of raw data is handled by Audacity, open source audio program.

Proper citation: An Opensource lickometer and microstructure analysis program (RRID:SCR_021589) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pried/

Portal provides open Source 3-D Printed Modular micro drive system for acute primate neurophysiology.

Proper citation: PRiED (RRID:SCR_021586) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/

Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages.

Proper citation: Automated Home-Cage Functional Imaging project (RRID:SCR_021567) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/d-track/

Project related to tracking animal behavior. Provided system includes two cameras and software package to track aquatic animals within captivity.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins.

Proper citation: D-Track project (RRID:SCR_021389) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/laubach-lab-github-repository/

Portal related to control and decision making, focusing on role of prefrontal cortex. American University scientists through their GitHub repository provide 3D print files for many of behavioral devices used in their lab, including Nosepoke and Lickometer designed from rats.

Proper citation: Laubach Lab GitHub Repository project (RRID:SCR_021464) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/vasic/

Project related to assessment of pain in animal models.Provided system includes weight bearing device for high throughput and unbiased behavioral pain assessment in rodents.Includes custom printed circuit board, infrared sensor, Arduino microcontroller, 3D printed parts, and open source software for analysis.

Proper citation: Voluntary Access Static Incapacitance Chamber project (RRID:SCR_021458) Copy   

•   Source: SciCrunch Registry