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URL: https://github.com/tseemann/VelvetOptimiser/
Proper Citation: VelvetOptimiser (RRID:SCR_024376)
Description: Software tool to run as wrapper script for Velvet assembler and to assist with optimising the assembly.Used to search supplied hash value range for optimum, estimates expected coverage and then searches for optimum coverage cutoff. Estimates insert lengths for paired end libraries. Can optimise assemblies by default optimisation condition or by user supplied one. It outputs the results to subdirectory and records all its operations in logfile.
Synonyms: velvetoptimiser, perl-velvetoptimiser
Resource Type: software resource, software application
Keywords: wrapper script, Velvet assembler, optimising assembly, optimum search, search supplied hash value range, optimum coverage cutoff,
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