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URL: https://github.com/ChristopherWilks/megadepth
Proper Citation: Megadepth (RRID:SCR_022779)
Description: Software tool for quantifying alignments and coverage for BigWig and BAM/CRAM input files.Quantifies number of RNA-seq reads assigned to gene in BAM file, successor of bamcounts.
Resource Type: data analysis software, software resource, data processing software, software application
Defining Citation: PMID:33693500
Keywords: quantifying alignments, BigWig and BAM/CRAM input files, RNA-seq reads assigned to gene in BAM file quantification,
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