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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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HAPLOCLUSTERS Resource Report Resource Website |
HAPLOCLUSTERS (RRID:SCR_007439) | HAPLOCLUSTERS | software application, software resource | Software program designed to detect excess haplotypes sharing in datasets consisting of case and control haplotypes. Excess haplotype sharing can be seen around disease loci in case samples since LD persists longer here than in the controls where LD is persisting only according to the relatedness of the individuals in the population, i.e. the age of the population. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
Aging | nlx_154014, biotools:haploclusters | https://bio.tools/haploclusters | SCR_007439 | 2026-02-15 09:19:35 | 0 | |||||||
|
LDSUPPORT Resource Report Resource Website |
LDSUPPORT (RRID:SCR_007036) | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, linux | is listed by: Genetic Analysis Software | nlx_154427 | SCR_007036 | 2026-02-15 09:19:40 | 0 | ||||||||||
|
LINKAGE Resource Report Resource Website |
LINKAGE (RRID:SCR_007033) | software application, software resource | Standard software package for genetic linkage called LINKAGE. Genetic linkage analysis is statistical technique used to map genes and find approximate location of disease genes. | Genetic linkage analysis, map genes, find location, disease, genes |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: FASTLINK |
nlx_154346, biotools:linkage | https://bio.tools/linkage https://gaow.github.io/genetic-analysis-software/l/lcp/ https://gaow.github.io/genetic-analysis-software/l/linkage-general-pedigrees/ |
http://www.jurgott.org/linkage/LinkagePC | SCR_007033 | , Linkage Control Program | 2026-02-15 09:19:21 | 0 | |||||||
|
Graphical Overview of Linkage Disequilibrium Resource Report Resource Website 1000+ mentions |
Graphical Overview of Linkage Disequilibrium (RRID:SCR_007151) | GOLD | software application, software resource | Software package that provides a graphical summary of linkage disequilibrium in human genetic data. The graphical summary is well suited to the analysis of dense genetic maps, where contingency tables are cumbersome to interpret. An interface to the Simwalk2 application allows for the analysis of family data. | gene, genetic, genomic |
is listed by: Genetic Analysis Software has parent organization: University of Michigan; Ann Arbor; USA |
PMID:10842743 | nlx_154363 | SCR_007151 | 2026-02-15 09:19:28 | 2212 | ||||||||
|
BMAPBUILDER Resource Report Resource Website 1+ mentions |
BMAPBUILDER (RRID:SCR_007264) | BMAPBUILDER | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, java, ms-windows, macos, unix, linux | is listed by: Genetic Analysis Software | nlx_154084 | SCR_007264 | 2026-02-15 09:19:23 | 1 | |||||||||
|
LINKAGE - CEPH Resource Report Resource Website |
LINKAGE - CEPH (RRID:SCR_007048) | LINKAGE - CEPH | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, ms-dos, os2, unix, vms | is listed by: Genetic Analysis Software | nlx_154429 | SCR_007048 | three-generation pedigrees, FASTLINK | 2026-02-15 09:19:26 | 0 | ||||||||
|
MULTIMAP Resource Report Resource Website 10+ mentions |
MULTIMAP (RRID:SCR_007168) | MULTIMAP | software application, software resource | Software program for automated construction of genetic maps (entry from Genetic Analysis Software) | gene, genetic, genomic, lisp, unix, (sun/compaq-alpha/hp..), bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154013, biotools:multimap | https://bio.tools/multimap | http://compgen.rutgers.edu/Multimap/ | SCR_007168 | 2026-02-15 09:19:29 | 27 | |||||||
|
MORGAN Resource Report Resource Website 100+ mentions |
MORGAN (RRID:SCR_006906) | MORGAN | software application, software resource | Software programs for segregation and linkage analysis, using a variety of Markov chain Monte Carlo (MCMC) methods. Includes MCMC methods for multilocus gene identity by descent (including homozygosity mapping) and Monte Carlo Lod scores. Also, other programs for EM analysis of quantitative traits. | gene, genetic, genomic, c, unix, compaq-alpha, solaris, linux, linkage disequilibrium, gl_lods, ibd_haplo, identity by descent, segregation, linkage analysis, markov chain monte carlo |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: University of Washington; Seattle; USA |
NIGMS GM-46255 | PMID:22298700 | nlx_154201, OMICS_00205 | SCR_006906 | MOnte caRlo Genetic ANalysis PANGAEA | 2026-02-15 09:19:24 | 305 | ||||||
|
FAMOZ Resource Report Resource Website 1+ mentions |
FAMOZ (RRID:SCR_007477) | FAMOZ | software application, software resource | Software application that uses likelihood calculation and simulation to perform parentage studies with codominant, dominant, cytoplasmic markers or combinations of the different types (entry from Genetic Analysis Software) | gene, genetic, genomic, c, tcl/tk, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154086 | SCR_007477 | FAther/MOther | 2026-02-15 09:19:36 | 5 | ||||||||
|
CLUMP Resource Report Resource Website 100+ mentions |
CLUMP (RRID:SCR_007476) | CLUMP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application that uses Monte Carlo method for assessing significance of a case-control association study with multi-allelic marker. (entry from Genetic Analysis Software). | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154028 | SCR_007476 | 2026-02-15 09:19:25 | 104 | ||||||||
|
TREESCAN Resource Report Resource Website 10+ mentions |
TREESCAN (RRID:SCR_007108) | TREESCAN | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that is intended to provide p-values for the hypothesis of association between evolutionary clades and continuous traits, using haplotype trees. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, ms-dos, macos, (x) | is listed by: Genetic Analysis Software | PMID:15681571 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154011 | SCR_007108 | 2026-02-15 09:19:28 | 12 | |||||||
|
Whap Resource Report Resource Website 1+ mentions |
Whap (RRID:SCR_007103) | Whap | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 24, 2015. This package is no longer supported. The majority of the functionality for conditional haplotype tests in population-based samples has been implemented in PLINK, with a better interface and more robust, faster computation: please use that from now on. Software tool to perform haplotype-based association analysis, for quantitative and qualitative traits, in population and family samples, using single nucleotide polymorphism or multiallelic marker data. What whap can do: * Analyze quantitative and qualitative traits * Handle unrelated individuals and/or parent-offspring trio data * Perform a regression-based haplotype association test for SNP data * Perform a secondary test based on pairwise haplotype similarity * Phase genotype data using a standard E-M approach, and handle ambiguity in E-M inferred haplotypes * Include covariates and moderator variables * Flexibly constrain effects across haplotypes to tested nested models * Perform a robust within-family test when parental genotypes are present * Analyze multiallelic markers (new) * Use dominant or recessive (new) genetic models (new) | gene, genetic, genomic, c, c++, unix, ms-windows, ms-dos, linux |
is listed by: Genetic Analysis Software is related to: PLINK |
MRC G9901258; NEI EY-12562 |
PMID:17118959 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31900 | SCR_007103 | 2026-02-15 09:19:27 | 9 | ||||||
|
SIBMED Resource Report Resource Website 1+ mentions |
SIBMED (RRID:SCR_007495) | SIBMED | software application, software resource | Software application that identifies likely genotyping errors and mutations for a sib pair in the context of multipoint mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, ms-windows, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:sibmed, nlx_154043 | https://bio.tools/sibmed | SCR_007495 | SIBling Mutation and Error Detection | 2026-02-15 09:19:46 | 1 | |||||||
|
BETA Resource Report Resource Website 100+ mentions |
BETA (RRID:SCR_007556) | BETA | software application, software resource | Software application for non-parametric linkage analysis using allele sharing in sib pairs (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, sun | is listed by: Genetic Analysis Software | nlx_154241 | SCR_007556 | 2026-02-15 09:19:38 | 127 | |||||||||
|
MAPCREATOR Resource Report Resource Website 1+ mentions |
MAPCREATOR (RRID:SCR_008001) | MAPCREATOR | software application, software resource | Software application to create gene maps using either radiation hybrid data or linkage data (entry from Genetic Analysis Software) | gene, genetic, genomic, perl | is listed by: Genetic Analysis Software | nlx_154455 | SCR_008001 | 2026-02-15 09:19:41 | 4 | |||||||||
|
SCOUT Resource Report Resource Website 10+ mentions |
SCOUT (RRID:SCR_009054) | SCOUT | software application, software resource | Software program for conducting combined association analysis of triads and unrelated subjects (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran (cvf 6.6) with imsl routines, ms-windows, (2000/xp) | is listed by: Genetic Analysis Software | nlx_154034 | SCR_009054 | 2026-02-15 09:20:02 | 40 | |||||||||
|
SEGPATH Resource Report Resource Website 1+ mentions |
SEGPATH (RRID:SCR_009052) | SEGPATH | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software for segregation and pathway analysis. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154030 | http://www.biostat.wustl.edu/~mike/segpath/ | SCR_009052 | SEGregation analysis and PATH analysis | 2026-02-15 09:19:37 | 2 | ||||||
|
FASTMAP (2) Resource Report Resource Website 1+ mentions |
FASTMAP (2) (RRID:SCR_008635) | FASTMAP (2) | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documetned on May 12,2023. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154311 | SCR_008635 | 2026-02-15 09:19:33 | 1 | ||||||||
|
KIN Resource Report Resource Website |
KIN (RRID:SCR_009047) | KIN | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software application to calculate kinship coefficient or coefficient of coancestry (the probability that alleles at a given locus are identical by descent). | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154022 | http://gnome.agrenv.mcgill.ca/tinker/kin.htm | SCR_009047 | 2026-02-15 09:19:56 | 0 | |||||||
|
GENOMESIMLA Resource Report Resource Website |
GENOMESIMLA (RRID:SCR_008990) | GENOMESIMLA | software application, software resource | Software application that is a forward-time population simulation method that can simulate realistic patterns of LD in both family-based and case-control datasets. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154348 | SCR_008990 | 2026-02-15 09:20:00 | 0 |
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